Jatropha Genome Database

JcCB0112721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112721.10 - phase: 0 /pseudo
         (329 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00090.1 | Symbols:  | transducin family protein / WD-40 repe...   383   e-107

>AT4G00090.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:34234-36594 FORWARD
          Length = 430

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/299 (63%), Positives = 223/299 (74%), Gaps = 10/299 (3%)

Query: 1   MDPVLPIAVLSVLLGALIAFLFFKSYSHKRESEIKSITKPELDSAPKKPTKPAQPVTXXX 60
           MD VL + + SV+LGALIA LFF SY  KR SE++S+ K E    P+ P +   P +   
Sbjct: 1   MDSVLVVGIASVILGALIAVLFFGSYFRKRTSEVQSMAKAE----PQDPIR--NPKSNHP 54

Query: 61  XXXXXXXXXXASDKDQIKRHHPLDLNTLKGHGDSVNGLCFSNDGRSLATACGDGVVRVFK 120
                     ASDK+Q KRHHPLDLNTLKGHGD+V GLCFS+DG+SLATAC DGV+RVFK
Sbjct: 55  APKKNHPKSQASDKNQNKRHHPLDLNTLKGHGDAVTGLCFSSDGKSLATACADGVIRVFK 114

Query: 121 LDDASSKSFKFLRISVPAGGHPXXXXXXXXXXXXXXXXQTLSGASLYMFGEEKVKPNESK 180
           LDDASSKSFKFLRI++PAGGHP                  +SG+SLYM+GE+K K     
Sbjct: 115 LDDASSKSFKFLRINLPAGGHPTAVAFADDASSIVVACHHMSGSSLYMYGEDKQK----D 170

Query: 181 QQSKLPLPEVKWEHHKIHDKNAVLTLVGTAATYGTADGSAIVASCSEATDIKLWYGRTGK 240
           QQ KLPLP +KW+HH IH+K +VLT+ G  ATYGTADGS ++ASCSE TDI LW+G+TG+
Sbjct: 171 QQGKLPLPSIKWDHHHIHEKRSVLTISGATATYGTADGSVVIASCSEGTDIVLWHGKTGR 230

Query: 241 ILGNVDTNQLKNTMATVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKVMQLKGHK 299
            LG+VDTNQLKN MA VSPNGRF+AAAAFTADVKVWEIVY KDGSVKEV +VMQLKGHK
Sbjct: 231 NLGHVDTNQLKNHMAAVSPNGRFLAAAAFTADVKVWEIVYQKDGSVKEVSRVMQLKGHK 289