Jatropha Genome Database

JcCB0112461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.20 - phase: 1 /partial
         (150 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18890.1 | Symbols:  | binding / catalytic/ coenzyme binding ...    56   7e-09

>AT3G18890.1 | Symbols:  | binding / catalytic/ coenzyme binding |
           chr3:6511169-6514729 FORWARD
          Length = 641

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 17/99 (17%)

Query: 56  APEEEQ---QHTEAKPRPLSPYAIYDDLKPPTSPIPAAPLVSIPTSSE----NGGPKAGN 108
           AP+E++   +    KPRPLSPYA Y+DLKPPTSPIP +     P  S+       P   N
Sbjct: 359 APKEDEAPPKEKNVKPRPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEAN 418

Query: 109 SAPPTAPE--------DMQQHTEAKPKPLSPFSMYEDMK 139
             P   P+        +++Q  E K +PLSP++ YE++K
Sbjct: 419 VVP--VPDSTSNVPVVEVKQVEEKKERPLSPYARYENLK 455



 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 27/101 (26%)

Query: 66  AKPRPLSPYAIYDDLKPPTSPIPAAP----LVSIPTSSENGGPKAG---------NSAPP 112
           +K RPLSPYAIY DLKPPTSP PA+       S+  +SE  G             N+ PP
Sbjct: 528 SKMRPLSPYAIYADLKPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPP 587

Query: 113 TAPEDMQQHTEA--------------KPKPLSPFSMYEDMK 139
           + PE +   + A              KP+PLSP++MY DMK
Sbjct: 588 STPEAVPVVSSAIDTSLASGDNTAQPKPRPLSPYTMYADMK 628