Jatropha Genome Database

JcCB0112461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.10 - phase: 0 /partial
         (201 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34360.1 | Symbols:  | protease-related | chr4:16432011-16433...   320   3e-88
AT3G60910.1 | Symbols:  | catalytic/ methyltransferase | chr3:22...   112   2e-25
AT3G17365.1 | Symbols:  | catalytic/ methyltransferase | chr3:59...   105   1e-23
AT2G31740.1 | Symbols:  | methyltransferase | chr2:13491053-1349...    73   1e-13
AT1G66680.1 | Symbols: AR401 | AR401 | chr1:24866352-24868888 RE...    57   9e-09

>AT4G34360.1 | Symbols:  | protease-related | chr4:16432011-16433752
           FORWARD
          Length = 248

 Score =  320 bits (821), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/196 (76%), Positives = 175/196 (89%), Gaps = 2/196 (1%)

Query: 6   HNVTPSTALAYLDPNYWNDRFSKEEHFEWFKDYSHFRHLIQAHITTNASMKVLELGCGNS 65
           ++V P +AL YLDP+YW++RFS EEH+EWFKDYSHF+HLI ++I  ++S  VLELGCGNS
Sbjct: 5   NSVGPPSALTYLDPHYWDERFSSEEHYEWFKDYSHFQHLIISNIKPSSS--VLELGCGNS 62

Query: 66  QLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLPFSDKCFDVVI 125
           QLCEE+YKDGI DITCIDLS+VAVEKM+ RL  KGYKEIKV++ADMLDLPF  + FDVVI
Sbjct: 63  QLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLPFDSESFDVVI 122

Query: 126 EKGTMDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRPLFNA 185
           EKGTMDVLFV++GDPWNPRP TV++V A LDGVHRVLKPDGIFISI+FGQPHFRRPLF  
Sbjct: 123 EKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKD 182

Query: 186 PEFTWSVEWNTFGDGF 201
           P+FTWS+E+NTFGDGF
Sbjct: 183 PKFTWSMEYNTFGDGF 198


>AT3G60910.1 | Symbols:  | catalytic/ methyltransferase |
           chr3:22501727-22503182 FORWARD
          Length = 252

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 14/190 (7%)

Query: 5   KHNVTPSTALAYLDPNYWNDRFSKEE-HFEWFKDYSHFRHLIQAHITTNASMKVLELGCG 63
           + +V+      Y D  YW+ R+ ++   F+W++ YS  R  +++ ++T++  +VL +GCG
Sbjct: 2   QRDVSSCNTYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFVSTSS--RVLMVGCG 59

Query: 64  NSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLP-FSDKCFD 122
           NS + E++ KDG  DI  +D+S+VA+E M+ + +     ++K ++ D+ D+  F D  FD
Sbjct: 60  NSLMSEDMVKDGYEDIMNVDISSVAIEMMQTKYA--SVPQLKYMQMDVRDMSYFEDDSFD 117

Query: 123 VVIEKGTMDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRPL 182
            +I+KGT+D L   S          +     ML  V R++KP G +  I++G P  R P 
Sbjct: 118 TIIDKGTLDSLMCGSD--------ALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPH 169

Query: 183 FNAPEFTWSV 192
                + W +
Sbjct: 170 LTRSAYNWKI 179


>AT3G17365.1 | Symbols:  | catalytic/ methyltransferase |
           chr3:5947144-5948766 REVERSE
          Length = 239

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 18/191 (9%)

Query: 8   VTPSTALAYLDPNYWNDRFSKE-EHFEWFKDYSHFRHLIQAHITTNASMKVLELGCGNSQ 66
            T +   +Y +  YW+DR+  E E F+W++ YS    LI  ++    + +VL +GCGNS 
Sbjct: 2   ATEAPTQSYSEQWYWDDRYKNESEPFDWYQKYSPLAPLINLYVPQR-NQRVLVIGCGNSA 60

Query: 67  LCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDL-PFSDKCFDVVI 125
             E +  DG  D+  ID+S+V ++ M ++ S +   ++K L+ D+ D+  F D  FD VI
Sbjct: 61  FSEGMVDDGYEDVVSIDISSVVIDTMIKKYSDR--PQLKYLKMDVRDMKAFEDASFDAVI 118

Query: 126 EKGTMDVLFVNSGDPWNPRPTTVAQVKAMLDGVHRVLKPDGIFISISFGQPHFRRPLFNA 185
           +KGT+D +   S    N R  +      ML+ V RVLK  G++I I++G P +R  LF  
Sbjct: 119 DKGTLDSILCGS----NSRQYST----QMLEEVWRVLKDKGVYILITYGAPIYRLRLFKE 170

Query: 186 PEFTWSVEWNT 196
                S  W T
Sbjct: 171 -----SCSWTT 176


>AT2G31740.1 | Symbols:  | methyltransferase |
           chr2:13491053-13495009 REVERSE
          Length = 760

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 11/137 (8%)

Query: 57  VLELGCGNSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVKGYKEIKVLEADMLDLPF 116
           +L  GCGNS+L E +Y  G  DIT +D S V +  M +R +++   E++    D+  +  
Sbjct: 72  ILVPGCGNSRLTEHLYDAGFRDITNVDFSKVVISDMLRR-NIRTRPELRWRVMDITKMQL 130

Query: 117 SDKCFDVVIEKGTMDVLFVNSGDPWNPRPTTVAQV-KAMLDGVHRVLKPDGIFISISFGQ 175
           +D+ FD V++KG +D L           P    ++    L    RVLKP G FI ++  +
Sbjct: 131 ADESFDTVLDKGALDALM---------EPEVGTKLGNQYLSEAKRVLKPGGKFICLTLAE 181

Query: 176 PHFRRPLFNAPEFTWSV 192
            H    LF+   F W +
Sbjct: 182 SHVLALLFSRFRFGWKM 198


>AT1G66680.1 | Symbols: AR401 | AR401 | chr1:24866352-24868888
           REVERSE
          Length = 358

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 15/123 (12%)

Query: 53  ASMKVLELGCGNSQLCEEIYKDGITDITCIDLSAVAVEKMRQRLSVK-GYKEIKVLEADM 111
           +S  VL+LG GN  L  ++ K+G +D+T  D S  AVE + Q LS + G+  I+ +  D+
Sbjct: 169 SSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVE-LAQHLSQRDGFPNIRFMVDDI 227

Query: 112 LDLPFSDKCFDVVIEKGTMDVLFVNSGDPWNPRPTTVAQVKAML--DGVHRVLKPDGIFI 169
           LD    ++ F +V++KGT+D + ++   P          VK ++  D V +++ P GI +
Sbjct: 228 LDTKL-EQQFKLVMDKGTLDAIGLHPDGP----------VKRVMYWDSVSKLVAPGGILV 276

Query: 170 SIS 172
             S
Sbjct: 277 ITS 279