Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative / g...   276   4e-75

>AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative |
           chr4:16471956-16476795 FORWARD
          Length = 886

 Score =  276 bits (705), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/145 (89%), Positives = 140/145 (96%)

Query: 1   MAQPLIKKDDDRDDEAEFSPFLGIEKGAVLQEARVFNDPQLDPRKCSQVITKLLYLLNQG 60
           MAQPL+KKDDD DDE E+SPF+GIEKGAVLQEARVFNDPQ+DPR+CSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKSD 120
           E+FTKVEATEVFF+VTKLFQS+D GLRRMVYL+IKELSPS+DEVIIVTSSLMKDMNSK D
Sbjct: 61  ESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKID 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERY 145
           MYRANAIRVLCRI DGTLLTQIERY
Sbjct: 121 MYRANAIRVLCRIIDGTLLTQIERY 145