Jatropha Genome Database

JcCB0111121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111121.10 - phase: 0 /partial
         (163 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19385.1 | Symbols:  | zinc ion binding | chr2:8387149-838858...   201   2e-52
AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing...   135   1e-32

>AT2G19385.1 | Symbols:  | zinc ion binding | chr2:8387149-8388581
           FORWARD
          Length = 275

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 101/116 (87%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGE+LKKPK+P+HF++C A+KLSCIDCGEMFG+D+VQGH QCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGESLKKPKVPSHFKMCRANKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPK 60

Query: 61  GQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
           GQ K+ NG   K    +KQ+PD DINVGLS R PWFCSLCNTKATS+QTLL HADG
Sbjct: 61  GQSKSANGTPAKPKDISKQEPDFDINVGLSNRYPWFCSLCNTKATSQQTLLAHADG 116


>AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:8383856-8386604 FORWARD
          Length = 613

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 87/175 (49%), Gaps = 59/175 (33%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGP- 59
           MVWFQC+DCGENLKKP+LP H  +C+A+K SCIDCG MFGQ SV  H QCITEAEKYGP 
Sbjct: 1   MVWFQCDDCGENLKKPRLPRHMSMCTATKFSCIDCGNMFGQVSVHYHNQCITEAEKYGPM 60

Query: 60  -----------------------------------------------KGQGKAPNGATPK 72
                                                          K Q KA   A   
Sbjct: 61  VRSNGESSKQKHDFDINAELFNSQWFCSLCNATMTCEQDYFAHVYGKKHQEKANEVADMD 120

Query: 73  TNKNAKQQP-----------DVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
            +K   + P           D+DI VGLS   PWFCSLC+  ATS+QTLL HA+G
Sbjct: 121 YSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYPWFCSLCDINATSEQTLLAHANG 175



 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 32/40 (80%)

Query: 77  AKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
           +KQQ +VDINVGLS   PWFCSLCN KAT +Q LL HA+G
Sbjct: 206 SKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANG 245