Jatropha Genome Database

JcCB0110731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110731.10 + phase: 0 /partial
         (503 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B (BR...   556   e-159
AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   542   e-154
AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   508   e-144

>AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B
           (BRCA2-LIKE B); protein binding / single-stranded DNA
           binding | chr5:235117-240911 REVERSE
          Length = 1155

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/513 (55%), Positives = 359/513 (69%), Gaps = 20/513 (3%)

Query: 1   DAVDDEKFGGLNNTISSIQKPLSNGSS-----GLDMLDDNSSAIGNGLRINTLARSSRGP 55
           D   DE    LN     I KP ++G S       DM  +NS   G   R   L R +  P
Sbjct: 373 DTAVDETNCALN-----ISKPATHGLSNNRPLASDMAVNNSKGNGFIPRARQLGRPADQP 427

Query: 56  LVDISNTLGTSCTNHRRVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTS 115
           LVDI+N   T+  N+++ + +K++LG+  S+S FKRPR S F  PL KN     +GLS  
Sbjct: 428 LVDITNRRDTAYANNKQDSTQKKRLGKTVSVSPFKRPRISSFKTPLKKNAQQASSGLSVV 487

Query: 116 SSENSCCRRTVSTRYPFRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCD 175
           S +    ++ +STRYP ++PR+YIKE+F +  +    +++  D V  IK   A+KY FCD
Sbjct: 488 SCDTLTSKKVLSTRYPEKSPRVYIKEFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCD 547

Query: 176 ESGVNCIGAEALYHMLVQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTV 235
           ES  N +GAE    ML +SGAS+Q  S++W  NHY+WI+WKLACY+  YP K    FLT+
Sbjct: 548 ESSSNKVGAETFLQMLAESGASLQHASRKWVTNHYRWIVWKLACYDIYYPAKCRGNFLTI 607

Query: 236 SNVHEELKYRYEREVNHGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKIENLALNG- 294
           +NV EELKYRYEREVNHGH SAIKRIL GD+P SSMMVLCISAI     P+ +N +    
Sbjct: 608 TNVLEELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAI----NPRTDNGSQEAH 663

Query: 295 --DECSNAARMELTDGWYSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPL 352
             D CSN  ++ELTDGWYS++A LD+ L+KQL+AGKLFVGQK+RI GA L GWA P SPL
Sbjct: 664 CSDNCSN-VKVELTDGWYSMNAALDVVLTKQLNAGKLFVGQKLRILGAGLSGWATPTSPL 722

Query: 353 EILASRTVSLLLHINGTYRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYP 412
           E + S T+ LLL+INGTYRAHWADRLGFCK +G PLAF CIK NGGP+P+TL G+TRIYP
Sbjct: 723 EAVISSTICLLLNINGTYRAHWADRLGFCKEIGVPLAFNCIKCNGGPVPKTLAGITRIYP 782

Query: 413 ILYKEKLRDGGSIVRSERMEARTMQLYNQRHSAVVEGIVSEYQR--KGSHIYNDSDSEEG 470
           ILYKE+L +  SIVRSER+E+R +QL+NQR SA+VEGI+ EYQR   G H  ND+DSEEG
Sbjct: 783 ILYKERLGEKKSIVRSERIESRIIQLHNQRRSALVEGIMCEYQRGINGVHSQNDTDSEEG 842

Query: 471 AKILKILETAADPEVIMAEMSPEQLNSFASCQA 503
           AK+ K+LETAA+PE++MAEMS EQL SF + +A
Sbjct: 843 AKVFKLLETAAEPELLMAEMSLEQLTSFTTYKA 875


>AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
           binding / single-stranded DNA binding | chr4:4107-10364
           REVERSE
          Length = 1151

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/509 (55%), Positives = 353/509 (69%), Gaps = 16/509 (3%)

Query: 1   DAVDDEKFGGLNNTISSIQKPLSNGSS-GLDMLDDNSSAIGNGLRINTLARSSRGPLVDI 59
           DA  DE    LN T       LSN  S   DM  +NS   G   R     R +  PLVDI
Sbjct: 373 DAAVDETDCALNAT-----HGLSNNRSLASDMAVNNSKVNGFIPRGRQPGRPADQPLVDI 427

Query: 60  SNTLGTSCTNHRRVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTSSSEN 119
           +N   T+   +++ + +K++LG+  S+S FKRPR S F  P  K+     +GLS  S + 
Sbjct: 428 TNRRDTAYAYNKQDSTQKKRLGKTVSVSPFKRPRISSFKTPSKKHALQASSGLSVVSCDT 487

Query: 120 SCCRRTVSTRYPFRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCDESGV 179
              ++ +STRYP ++PR+YIK++F +  +    +++  D V  IK   A+KY FCDES  
Sbjct: 488 LTSKKVLSTRYPEKSPRVYIKDFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCDESSS 547

Query: 180 NCIGAEALYHMLVQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTVSNVH 239
           N +GAE    ML +SGAS+Q  S++W  NHY+WI+WKLACY+  YP K    FLT++NV 
Sbjct: 548 NKVGAETFLQMLAESGASLQHASRKWVTNHYRWIVWKLACYDIYYPAKCRGNFLTITNVL 607

Query: 240 EELKYRYEREVNHGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKIENLALNG---DE 296
           EELKYRYEREVNHGH SAIKRIL GD+P SSMMVLCISAI     PK +N +      D 
Sbjct: 608 EELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAI----NPKTDNDSQEAHCSDS 663

Query: 297 CSNAARMELTDGWYSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPLEILA 356
           CSN  ++ELTDGWYS++A LD+ L+KQL+AGKLFVGQK+RI GA L GWA P SPLE + 
Sbjct: 664 CSN-VKVELTDGWYSMNAALDVVLTKQLNAGKLFVGQKLRILGAGLSGWATPTSPLEAVI 722

Query: 357 SRTVSLLLHINGTYRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYPILYK 416
           S T+ LLL+INGTYRAHWADRLGFCK +G PLA  CIK NGGP+P+TL G+ RIYPILYK
Sbjct: 723 SSTICLLLNINGTYRAHWADRLGFCKEIGVPLALNCIKCNGGPVPKTLAGIKRIYPILYK 782

Query: 417 EKLRDGGSIVRSERMEARTMQLYNQRHSAVVEGIVSEYQR--KGSHIYNDSDSEEGAKIL 474
           E+L +  SIVRSER+E+R +QL+NQR SA+VEGI+ EYQR   G H  ND+DSEEGAKI 
Sbjct: 783 ERLGEKKSIVRSERIESRIIQLHNQRRSALVEGIMCEYQRGINGVHSQNDTDSEEGAKIF 842

Query: 475 KILETAADPEVIMAEMSPEQLNSFASCQA 503
           K+LETAA+PE +MAEMSPEQL SF + +A
Sbjct: 843 KLLETAAEPEFLMAEMSPEQLRSFTTYKA 871


>AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
           binding / single-stranded DNA binding | chr4:2895-10364
           REVERSE
          Length = 1187

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/509 (54%), Positives = 344/509 (67%), Gaps = 21/509 (4%)

Query: 1   DAVDDEKFGGLNNTISSIQKPLSNGSS-GLDMLDDNSSAIGNGLRINTLARSSRGPLVDI 59
           DA  DE    LN T       LSN  S   DM  +NS   G   R     R +  PLVDI
Sbjct: 373 DAAVDETDCALNAT-----HGLSNNRSLASDMAVNNSKVNGFIPRGRQPGRPADQPLVDI 427

Query: 60  SNTLGTSCTNHRRVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTSSSEN 119
           +N   T+   +++ + +K++LG+  S+S FKRPR S F  P  K+     +GLS  S + 
Sbjct: 428 TNRRDTAYAYNKQDSTQKKRLGKTVSVSPFKRPRISSFKTPSKKHALQASSGLSVVSCDT 487

Query: 120 SCCRRTVSTRYPFRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCDESGV 179
              ++ +STRYP ++PR+YIK++F +  +    +++  D V  IK   A+KY FCDES  
Sbjct: 488 LTSKKVLSTRYPEKSPRVYIKDFFGMHPTATTRMDYVPDHVRRIKSSNADKYVFCDESSS 547

Query: 180 NCIGAEALYHMLVQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTVSNVH 239
           N +GAE    ML +S   +   S E  M    WI+WKLACY+  YP K    FLT++NV 
Sbjct: 548 NKVGAETFLQMLAES-EKVCDRSFEACM----WIVWKLACYDIYYPAKCRGNFLTITNVL 602

Query: 240 EELKYRYEREVNHGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKIENLALNG---DE 296
           EELKYRYEREVNHGH SAIKRIL GD+P SSMMVLCISAI     PK +N +      D 
Sbjct: 603 EELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAI----NPKTDNDSQEAHCSDS 658

Query: 297 CSNAARMELTDGWYSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPLEILA 356
           CSN  ++ELTDGWYS++A LD+ L+KQL+AGKLFVGQK+RI GA L GWA P SPLE + 
Sbjct: 659 CSNV-KVELTDGWYSMNAALDVVLTKQLNAGKLFVGQKLRILGAGLSGWATPTSPLEAVI 717

Query: 357 SRTVSLLLHINGTYRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYPILYK 416
           S T+ LLL+INGTYRAHWADRLGFCK +G PLA  CIK NGGP+P+TL G+ RIYPILYK
Sbjct: 718 SSTICLLLNINGTYRAHWADRLGFCKEIGVPLALNCIKCNGGPVPKTLAGIKRIYPILYK 777

Query: 417 EKLRDGGSIVRSERMEARTMQLYNQRHSAVVEGIVSEYQR--KGSHIYNDSDSEEGAKIL 474
           E+L +  SIVRSER+E+R +QL+NQR SA+VEGI+ EYQR   G H  ND+DSEEGAKI 
Sbjct: 778 ERLGEKKSIVRSERIESRIIQLHNQRRSALVEGIMCEYQRGINGVHSQNDTDSEEGAKIF 837

Query: 475 KILETAADPEVIMAEMSPEQLNSFASCQA 503
           K+LETAA+PE +MAEMSPEQL SF + +A
Sbjct: 838 KLLETAAEPEFLMAEMSPEQLRSFTTYKA 866