Jatropha Genome Database

JcCB0109661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109661.10 - phase: 0 
         (139 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57930.2 | Symbols:  | unknown protein | chr3:21447250-214476...    96   6e-21
AT3G57930.1 | Symbols:  | unknown protein | chr3:21447250-214476...    96   6e-21
AT2G42190.1 | Symbols:  | unknown protein | chr2:17583625-175840...    87   3e-18

>AT3G57930.2 | Symbols:  | unknown protein | chr3:21447250-21447675
           REVERSE
          Length = 141

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 12/144 (8%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXX---XXXXXXX 57
           M RGRGKGK+Q   A  ED   GE++++PA+++RGRP KP+                   
Sbjct: 1   MRRGRGKGKRQNATA-REDRGSGEEEKIPAFRKRGRPQKPVKDEEEEEEELVKKTDEEED 59

Query: 58  XXXXVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGR- 116
                N S+++K+      TENG+KRK+P  + E ++  +EEN V +K ST++S  S   
Sbjct: 60  KDDDTNGSVTSKEN----VTENGRKRKKPVESKE-SNITEEENGVGSKSSTEDSMKSSSS 114

Query: 117 --FQQNGSRRKNKPRRAAEAVVEC 138
             F+QNGSRRKNKPRRAAEAVVEC
Sbjct: 115 IGFRQNGSRRKNKPRRAAEAVVEC 138


>AT3G57930.1 | Symbols:  | unknown protein | chr3:21447250-21447675
           REVERSE
          Length = 141

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 12/144 (8%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXX---XXXXXXX 57
           M RGRGKGK+Q   A  ED   GE++++PA+++RGRP KP+                   
Sbjct: 1   MRRGRGKGKRQNATA-REDRGSGEEEKIPAFRKRGRPQKPVKDEEEEEEELVKKTDEEED 59

Query: 58  XXXXVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGR- 116
                N S+++K+      TENG+KRK+P  + E ++  +EEN V +K ST++S  S   
Sbjct: 60  KDDDTNGSVTSKEN----VTENGRKRKKPVESKE-SNITEEENGVGSKSSTEDSMKSSSS 114

Query: 117 --FQQNGSRRKNKPRRAAEAVVEC 138
             F+QNGSRRKNKPRRAAEAVVEC
Sbjct: 115 IGFRQNGSRRKNKPRRAAEAVVEC 138


>AT2G42190.1 | Symbols:  | unknown protein | chr2:17583625-17584050
           FORWARD
          Length = 141

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 4/140 (2%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXXX 60
           M RGRGKGKKQ   A  ED   G+++++PAY+RRGRP KP+                   
Sbjct: 1   MRRGRGKGKKQNASA-REDRGSGDEEKIPAYRRRGRPQKPMKDDFEEEEEEDDEEMVEKM 59

Query: 61  XVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNS--AVSGRFQ 118
            V D     D  S+  +++ ++RKR      N D  +EEN + +K +TD+S  + S  F+
Sbjct: 60  EVEDEDEEIDDGSVT-SKDLKERKRKMSNGSNTDLTEEENGLGSKPNTDDSTRSTSIGFR 118

Query: 119 QNGSRRKNKPRRAAEAVVEC 138
           QNGSRRK+KPRRAAEAVVEC
Sbjct: 119 QNGSRRKSKPRRAAEAVVEC 138