Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109281.10 - phase: 0 
         (237 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14120.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   261   3e-70
AT3G14120.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   261   4e-70

>AT3G14120.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: transport; LOCATED IN: nuclear pore;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
           protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
           to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
           Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
           Other Eukaryotes - 5 (source: NCBI BLink). |
           chr3:4677993-4685455 FORWARD
          Length = 1077

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/213 (64%), Positives = 162/213 (76%), Gaps = 9/213 (4%)

Query: 1   METSPSYFDPEDLTSREQFRRYGKRHSTSSVSPHKDISVSKFKESRLLYEGQSIHSPTNA 60
           M+TSPSYFDPE L+ R+QFRRY KRHSTS   PH+++  S   E+RLLY+G +IHSPTN 
Sbjct: 5   MDTSPSYFDPEALSVRDQFRRYRKRHSTS---PHEEMLSSNVSENRLLYDGHNIHSPTNT 61

Query: 61  ALLLENIKQETDSIGYTDHFGGTPARTHSTFKRRSSIDSYGISEVDLGADSVRRHGSESL 120
           ALLLENIK+E D+  +TDH+ GTP    S  +R    +S GI   D  A   RR  S+SL
Sbjct: 62  ALLLENIKEEVDNF-HTDHYEGTPTNPISASRR----ESVGILNDDDEA-LFRRVESQSL 115

Query: 121 KACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILRFEKSCRDVSESIRYGPKIR 180
           KACKIE+D L + G+T F LFASL DSA+QGLM IP+L+LR E+SCR+VS+SIRYG  IR
Sbjct: 116 KACKIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIR 175

Query: 181 HRVVEDKLMRQKAQLLLDEAASWSLLWYLYGKG 213
           HR VEDKLMRQKAQLLL EAASWSLLW LYGKG
Sbjct: 176 HRAVEDKLMRQKAQLLLGEAASWSLLWNLYGKG 208


>AT3G14120.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: transport; LOCATED IN: nuclear pore;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
           protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
           to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
           Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
           Other Eukaryotes - 5 (source: NCBI BLink). |
           chr3:4677993-4685455 FORWARD
          Length = 1101

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 137/213 (64%), Positives = 162/213 (76%), Gaps = 9/213 (4%)

Query: 1   METSPSYFDPEDLTSREQFRRYGKRHSTSSVSPHKDISVSKFKESRLLYEGQSIHSPTNA 60
           M+TSPSYFDPE L+ R+QFRRY KRHSTS   PH+++  S   E+RLLY+G +IHSPTN 
Sbjct: 5   MDTSPSYFDPEALSVRDQFRRYRKRHSTS---PHEEMLSSNVSENRLLYDGHNIHSPTNT 61

Query: 61  ALLLENIKQETDSIGYTDHFGGTPARTHSTFKRRSSIDSYGISEVDLGADSVRRHGSESL 120
           ALLLENIK+E D+  +TDH+ GTP    S  +R    +S GI   D  A   RR  S+SL
Sbjct: 62  ALLLENIKEEVDNF-HTDHYEGTPTNPISASRR----ESVGILNDDDEA-LFRRVESQSL 115

Query: 121 KACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILRFEKSCRDVSESIRYGPKIR 180
           KACKIE+D L + G+T F LFASL DSA+QGLM IP+L+LR E+SCR+VS+SIRYG  IR
Sbjct: 116 KACKIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSIRYGSDIR 175

Query: 181 HRVVEDKLMRQKAQLLLDEAASWSLLWYLYGKG 213
           HR VEDKLMRQKAQLLL EAASWSLLW LYGKG
Sbjct: 176 HRAVEDKLMRQKAQLLLGEAASWSLLWNLYGKG 208