Jatropha Genome Database

JcCB0108421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108421.10 - phase: 0 /partial
         (425 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05230.1 | Symbols:  | ubiquitin-protein ligase | chr5:155159...   214   9e-56
AT2G40640.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   182   5e-46
AT2G40640.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   181   7e-46
AT3G19895.1 | Symbols:  | unknown protein | chr3:6917530-6921211...   142   3e-34
AT2G40640.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   110   2e-24

>AT5G05230.1 | Symbols:  | ubiquitin-protein ligase |
           chr5:1551593-1553543 FORWARD
          Length = 363

 Score =  214 bits (545), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 136/220 (61%), Gaps = 5/220 (2%)

Query: 197 GEVIAVKDGGGHIGQTGTNAVTIAEPDGEMYYSQYLQATEGAGSGGKD---VGVENGCXX 253
           G++   KD G      G  AV +   D   YYSQ+ +  E +     +   +  +NGC  
Sbjct: 108 GDIGMNKDAGEDSVSAG--AVIVVGQDNAAYYSQHFKTVEASFVSRNEESSIAADNGCDF 165

Query: 254 XXXXXXXXXXXXXXXXLRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCS 313
                           LR ILSD  TG+LM DAMILPCGH+FGAGGI+ V + KAC TCS
Sbjct: 166 SGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCS 225

Query: 314 QSISEDAIAPNLSLRAAVQAFRREEELQFYRSSKRRRERFDQDKGVYGDSTATDTPRGRG 373
           Q +SED+I PNL+LR AVQAF REE  Q    SKR+RE FDQ++  +G +  +   R + 
Sbjct: 226 QPVSEDSITPNLTLRVAVQAFCREENSQSNHPSKRKREGFDQERRAFGVTNHSGRSRNKS 285

Query: 374 VQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
             FPFAV DRVIIKGNKRTP RFVGREAVVTTQCLNGW+V
Sbjct: 286 NHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYV 325


>AT2G40640.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 13 plant
           structures; EXPRESSED DURING: 6 growth stages; BEST
           Arabidopsis thaliana protein match is: ubiquitin-protein
           ligase (TAIR:AT5G05230.1); Has 41 Blast hits to 41
           proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:16961323-16963198 REVERSE
          Length = 383

 Score =  182 bits (461), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           L+AILSD VTGALM+DA ILPCGHSFGAGG++ V + KAC+TCSQ   E +  PNLSLR 
Sbjct: 202 LKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNLSLRI 261

Query: 330 AVQAFRREEELQFYRSSKRRRERFDQDKGVYGDSTATDTPR-GRGVQFPFAVTDRVIIKG 388
            V AFR+EE+     + KRR+ER DQ +  +     T+TP+  RG+QFPF++ D +II+G
Sbjct: 262 VVHAFRQEEDSDHIHTLKRRKERSDQKRS-FCIPNITETPKSSRGIQFPFSIGDHIIIEG 320

Query: 389 NKRTPQRFVGREAVVTTQCLNGWFV 413
           NKRTP RFVGR AV+ TQCLNGW+V
Sbjct: 321 NKRTPPRFVGRIAVIMTQCLNGWYV 345


>AT2G40640.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 13 plant
           structures; EXPRESSED DURING: 6 growth stages; BEST
           Arabidopsis thaliana protein match is: ubiquitin-protein
           ligase (TAIR:AT5G05230.1); Has 41 Blast hits to 41
           proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:16961488-16963198 REVERSE
          Length = 352

 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           L+AILSD VTGALM+DA ILPCGHSFGAGG++ V + KAC+TCSQ   E +  PNLSLR 
Sbjct: 202 LKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNLSLRI 261

Query: 330 AVQAFRREEELQFYRSSKRRRERFDQDKGVYGDSTATDTPR-GRGVQFPFAVTDRVIIKG 388
            V AFR+EE+     + KRR+ER DQ +  +     T+TP+  RG+QFPF++ D +II+G
Sbjct: 262 VVHAFRQEEDSDHIHTLKRRKERSDQKRS-FCIPNITETPKSSRGIQFPFSIGDHIIIEG 320

Query: 389 NKRTPQRFVGREAVVTTQCLNGWFVHLLALSSFH 422
           NKRTP RFVGR AV+ TQCLNGW   L  ++SFH
Sbjct: 321 NKRTPPRFVGRIAVIMTQCLNGW---LSLVASFH 351


>AT3G19895.1 | Symbols:  | unknown protein | chr3:6917530-6921211
           REVERSE
          Length = 554

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 102/147 (69%), Gaps = 4/147 (2%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           LR++LSD ++GA ++DAM++ CGHSFG   ++ V+    C  C+  I   ++ PN +LRA
Sbjct: 370 LRSVLSDPISGAFLEDAMVVSCGHSFGGLMLRRVLEMSRCTLCNTEIESGSLVPNHALRA 429

Query: 330 AVQAFRREEELQFYRSS---KRRRERFDQDKGVYGDSTATDTPRGRGVQFPFAVTDRVII 386
           A  A +++++ + + ++   +RR+E  DQ     GD  ATD    R V +PFAV ++V+I
Sbjct: 430 AASAIKQQDDKRLFHNAAMRRRRKEMSDQMDVENGD-PATDDGMHRVVHYPFAVNEKVLI 488

Query: 387 KGNKRTPQRFVGREAVVTTQCLNGWFV 413
           KGN+RTP++FVG+EA+VT+QCLNGW++
Sbjct: 489 KGNRRTPEKFVGKEAIVTSQCLNGWYL 515


>AT2G40640.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 13 plant
           structures; EXPRESSED DURING: 6 growth stages; BEST
           Arabidopsis thaliana protein match is: ubiquitin-protein
           ligase (TAIR:AT5G05230.1); Has 40 Blast hits to 40
           proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:16961685-16963198 REVERSE
          Length = 314

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           L+AILSD VTGALM+DA ILPCGHSFGAGG++ V + KAC+TCSQ   E +  PNLSLR 
Sbjct: 202 LKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNLSLRI 261

Query: 330 AVQAFRREEELQFYRSSKRRRER 352
            V AFR+EE+     + KRR+ER
Sbjct: 262 VVHAFRQEEDSDHIHTLKRRKER 284