Jatropha Genome Database

JcCB0108291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108291.30 + phase: 0 
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52940.2 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-ste...    72   7e-14
AT3G52940.1 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-ste...    71   1e-13

>AT3G52940.2 | Symbols: FK, HYD2, ELL1 | FK (FACKEL);
          delta14-sterol reductase | chr3:19631030-19633112
          REVERSE
          Length = 262

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 1  MDMGFLLHALIPSWNSVVVLAXXXXYLAIAGSILPGKVVPGVTLQDGSRLYYRCNGXXXX 60
          MD+G LL    PS  SV VL     YLA+AG ILPGKV+ GV L DGS+L YRCNG    
Sbjct: 5  MDLGVLL----PSLQSVYVLVFYFVYLAVAGEILPGKVIRGVLLSDGSQLRYRCNGLLAL 60

Query: 61 XXXXXXXGIGAKMDLVSPTV 80
                 GI AK+ +VSP V
Sbjct: 61 ILLVAILGICAKLGIVSPLV 80


>AT3G52940.1 | Symbols: FK, HYD2, ELL1 | FK (FACKEL);
          delta14-sterol reductase | chr3:19630369-19633112
          REVERSE
          Length = 369

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 1  MDMGFLLHALIPSWNSVVVLAXXXXYLAIAGSILPGKVVPGVTLQDGSRLYYRCNGXXXX 60
          MD+G LL    PS  SV VL     YLA+AG ILPGKV+ GV L DGS+L YRCNG    
Sbjct: 5  MDLGVLL----PSLQSVYVLVFYFVYLAVAGEILPGKVIRGVLLSDGSQLRYRCNGLLAL 60

Query: 61 XXXXXXXGIGAKMDLVSPTV 80
                 GI AK+ +VSP V
Sbjct: 61 ILLVAILGICAKLGIVSPLV 80