Jatropha Genome Database

JcCB0108171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108171.10 - phase: 0 
         (596 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47820.1 | Symbols:  | unknown protein | chr2:19588122-195906...   280   2e-75
AT1G09040.1 | Symbols:  | unknown protein | chr1:2912362-2915174...   198   7e-51
AT1G09050.1 | Symbols:  | unknown protein | chr1:2918031-2920858...   192   7e-49
AT1G55050.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   177   2e-44
AT1G55050.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   177   2e-44

>AT2G47820.1 | Symbols:  | unknown protein | chr2:19588122-19590629
           FORWARD
          Length = 805

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 296/583 (50%), Gaps = 67/583 (11%)

Query: 3   SMLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINS 62
           ++L+VS+ F E KI+ E+YVFTLK+ VGI+M  + +GIGKGK DLT  A+EPTK  H  S
Sbjct: 244 TLLKVSKAFREDKIALEDYVFTLKNTVGIDMLTQVIGIGKGKRDLTNCALEPTKLNHGAS 303

Query: 63  ------IRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSE 116
                 IR ++PI         +DI+KFLTG++R+SK RS+ LFWEAVWPRLLARGWHSE
Sbjct: 304 GNSQVRIRNDLPI---------ADIVKFLTGEYRMSKTRSSDLFWEAVWPRLLARGWHSE 354

Query: 117 QPKDNGSSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIE-E 175
           QPKD    G K+SLVFL+P   KFSRR++ K  HYFDS++DVLNKVA DP LLEL+ + E
Sbjct: 355 QPKD----GPKNSLVFLVPEANKFSRRKMSKGNHYFDSLTDVLNKVALDPTLLELDEDLE 410

Query: 176 VKGSKHKEECNWDPSLKL---DQDGLINKQHQCYLQPH-RSNYSQDVPKFTVVDTSLAHG 231
            KGSK +   N DP   L   D     +K+ + YLQP  ++   Q+V  FT++DTS  + 
Sbjct: 411 RKGSKEEVIKN-DPPTNLEEFDDSSPNSKKKKKYLQPRSKTRKIQEVMLFTIIDTSETNS 469

Query: 232 AEQHKVRELRSLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAEDVTVSSSDC 291
            E   ++ELRSLPV                                   A  V    S  
Sbjct: 470 IEGCTLKELRSLPVGTGSSIANSSSYLSESEDNMSEESENKAETTAKSMASRVCGGGSIS 529

Query: 292 ANNLPNIDRHNYLCQTIAAEENNENKIRSVINAKEEKKTMKYQFGRKVKSSCSKYLVPIT 351
           +    +++  N    +  +           +N +++K        RK     +  L+P+ 
Sbjct: 530 SGKSSSVNMDNATSPSTIS-----------LNERQQK-------NRKGGRPRNPKLLPVC 571

Query: 352 NQQSDIA-CDPKDSSCSNKNMSAERQLNEDESHCTAKSHDTCEHMV------VQESPMQN 404
            ++S +A C  +++ C  +  S +++  +   H          ++V      + E     
Sbjct: 572 TKRSSLADCTLREAGCFGETQSRKKKPLKKGKHMRPNPLKADLNVVLTREERINEDKTLK 631

Query: 405 SSPASSLAKDSPVESNEGIVGENCLGREAYPENTQSPKLIDLNIPHVSPDFPV--TEPIM 462
            S  SS A+DS    N        + RE  PE ++S +  DLN+  +S +     T+ +M
Sbjct: 632 LSSTSSFARDSSCRRN--------IDREISPERSESREDFDLNVSQISLEREADGTDTVM 683

Query: 463 TDREQDDDNSCENKSVFLSGTGQQPEPFKLPDAGPHLAQQPLANSRRQSTRNRPLTTKAL 522
            D  Q+ ++SC  +S       +Q +P +L      L +      RRQSTR RPLTTKAL
Sbjct: 684 ADVVQNSESSCAEQSSVQVDVEKQCKPQELQVTADLLPE------RRQSTRTRPLTTKAL 737

Query: 523 EALELGFFSPKKKRKGADISESNSLSGSSRQVRKRIRVKATPK 565
           EA   G+     K + A   ES + S   R+  +  R K+T +
Sbjct: 738 EAFAFGYLGNSNKERKAS-EESRTKSNKKRKASEESRTKSTKR 779


>AT1G09040.1 | Symbols:  | unknown protein | chr1:2912362-2915174
           FORWARD
          Length = 911

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 150/244 (61%), Gaps = 18/244 (7%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEP--TKPGHIN 61
           ++ VS+ FAEG I+ E+YV  +K+ VG+ + ++AV IGK K DLT     P  TKP    
Sbjct: 240 LVDVSKSFAEGTITLEKYVSAVKNLVGLRLLVDAVAIGKEKEDLTVPTSTPMKTKPWFTV 299

Query: 62  SIRPEIPIGKA-CSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKD 120
           S +  +  G+   +SLTS+ II  LTG  RLSKAR N +FW AVWPRLLARGWHS+QP+D
Sbjct: 300 SSKSSLVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFWGAVWPRLLARGWHSQQPED 359

Query: 121 NGSSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEI----EEV 176
            G   SK  +VF++PGVKKFSR+ LVK  HYFDSVSD+L KV S+P LLE E      E+
Sbjct: 360 RGYFKSKDYIVFIVPGVKKFSRQELVKGDHYFDSVSDILTKVVSEPELLENETGGVAAEL 419

Query: 177 KGSKHKEECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHK 236
              K  EE     SL+          H+ YL+   SN      KFTVVDTSLA G +   
Sbjct: 420 SSDKSDEESVPSDSLR----------HR-YLRSPCSNRGTLGMKFTVVDTSLATGGKLCD 468

Query: 237 VREL 240
           +R L
Sbjct: 469 LRNL 472


>AT1G09050.1 | Symbols:  | unknown protein | chr1:2918031-2920858
           FORWARD
          Length = 916

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 147/240 (61%), Gaps = 10/240 (4%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEP--TKPGHIN 61
           ++ VS+ FAEG I+ E+YV  +K+ VG+ + ++AV IGK K DLT     P  TKP    
Sbjct: 240 LVDVSKSFAEGTITLEKYVSAVKNLVGLRLLVDAVAIGKEKEDLTVPTSTPMKTKPWFTV 299

Query: 62  SIRPEIPIGKA-CSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKD 120
           S +  +  G+   +SLTS+ II  LTG  RLSKAR N +FW AVWPRLLARGW S+QP+D
Sbjct: 300 SSKSSLVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFWGAVWPRLLARGWRSQQPED 359

Query: 121 NGSSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSK 180
            G   SK  +VF++PGVKKFSR+ LVK  HYFDSVSD+L KV S+P LLE E   V    
Sbjct: 360 RGYFKSKDYIVFIVPGVKKFSRQELVKGDHYFDSVSDILTKVVSEPELLENETGGVAAEN 419

Query: 181 HKEECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVREL 240
             ++         +     + +H+ YL+   SN      KFTVVDTSLA G +   +R L
Sbjct: 420 PSDQ------SDEESSPSDSLRHR-YLRSPCSNRGTLGMKFTVVDTSLATGGKLCDLRNL 472


>AT1G55050.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: cultured cell;
           CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949);
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G09050.1); Has 2245 Blast hits to 1824
           proteins in 229 species: Archae - 0; Bacteria - 114;
           Metazoa - 922; Fungi - 135; Plants - 108; Viruses - 17;
           Other Eukaryotes - 949 (source: NCBI BLink). |
           chr1:20542779-20545612 FORWARD
          Length = 915

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 142/240 (59%), Gaps = 18/240 (7%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINSI 63
           ++ VS+ FAEGK S EEY+  +K  VG+   +EAV IGK K DLT +  +P        +
Sbjct: 223 LVDVSKSFAEGKKSLEEYINAVKKLVGLRCLVEAVAIGKDKEDLTVLTTKPVDVEQWFRV 282

Query: 64  RPEIPIGKA-CSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKDNG 122
              +P G    +SLT   II+ L+G  R+SKAR N +FW+AVWPRLL RGW SE PKD G
Sbjct: 283 SSAVPAGLGEYNSLTVEGIIEKLSGGSRVSKARCNDIFWDAVWPRLLHRGWRSELPKDQG 342

Query: 123 SSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHK 182
              SK  +VFL+PGVKKFSR++LVK  HYFDS+SD+L KV S+P LLE   EE +     
Sbjct: 343 YIKSKEHIVFLVPGVKKFSRKKLVKRDHYFDSISDILKKVVSEPELLEETAEEEREENTY 402

Query: 183 EECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTS-LAHGAEQHKVRELR 241
            +                ++  CYL+   S+ +    KFTVVDTS  A   + ++ RELR
Sbjct: 403 NQS--------------KQEKHCYLRSPSSSSTH--MKFTVVDTSRFASRGKLYEFRELR 446


>AT1G55050.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: cultured cell;
           CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949);
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G09050.1); Has 2245 Blast hits to 1824
           proteins in 229 species: Archae - 0; Bacteria - 114;
           Metazoa - 922; Fungi - 135; Plants - 108; Viruses - 17;
           Other Eukaryotes - 949 (source: NCBI BLink). |
           chr1:20542779-20545612 FORWARD
          Length = 915

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 142/240 (59%), Gaps = 18/240 (7%)

Query: 4   MLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINSI 63
           ++ VS+ FAEGK S EEY+  +K  VG+   +EAV IGK K DLT +  +P        +
Sbjct: 223 LVDVSKSFAEGKKSLEEYINAVKKLVGLRCLVEAVAIGKDKEDLTVLTTKPVDVEQWFRV 282

Query: 64  RPEIPIGKA-CSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKDNG 122
              +P G    +SLT   II+ L+G  R+SKAR N +FW+AVWPRLL RGW SE PKD G
Sbjct: 283 SSAVPAGLGEYNSLTVEGIIEKLSGGSRVSKARCNDIFWDAVWPRLLHRGWRSELPKDQG 342

Query: 123 SSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHK 182
              SK  +VFL+PGVKKFSR++LVK  HYFDS+SD+L KV S+P LLE   EE +     
Sbjct: 343 YIKSKEHIVFLVPGVKKFSRKKLVKRDHYFDSISDILKKVVSEPELLEETAEEEREENTY 402

Query: 183 EECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTS-LAHGAEQHKVRELR 241
            +                ++  CYL+   S+ +    KFTVVDTS  A   + ++ RELR
Sbjct: 403 NQS--------------KQEKHCYLRSPSSSSTH--MKFTVVDTSRFASRGKLYEFRELR 446