Jatropha Genome Database

JcCB0107551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107551.10 - phase: 0 /partial
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protei...   221   2e-58
AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protei...   218   1e-57
AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protei...   218   2e-57

>AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 376

 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 126/165 (76%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK IP++LMGCGGVGR L+QHIVSCRSLHAK GVH+RV+GVCDSKSLVA  DV   ELND
Sbjct: 1   MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 61  AFLSEVCRVKLNGSSLSTLADFDECLVYSNSESKRKVIDIAALLGKSTGLAFVDCSASSE 120
             LSEVC +K  GS+LS L       V  +SE   +  +IA LLGKSTGLA VDCSAS E
Sbjct: 61  ELLSEVCLIKSTGSALSKLGALGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSASME 120

Query: 121 TIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
           TI +L + VDL CCIVLANKKP+TSTLE YDKL  +PR IRHEST
Sbjct: 121 TIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHEST 165


>AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 128/167 (76%), Gaps = 2/167 (1%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK IP++LMGCGGVGR L+QHIVSCRSLHAK GVH+RV+GVCDSKSLVA  DV   ELND
Sbjct: 1   MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 61  AFLSEVCRVKLNGSSLSTLADFDE--CLVYSNSESKRKVIDIAALLGKSTGLAFVDCSAS 118
             LSEVC +K  GS+LS L   ++    V  +SE   +  +IA LLGKSTGLA VDCSAS
Sbjct: 61  ELLSEVCLIKSTGSALSKLGALEKGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSAS 120

Query: 119 SETIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
            ETI +L + VDL CCIVLANKKP+TSTLE YDKL  +PR IRHEST
Sbjct: 121 METIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHEST 167


>AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 128/167 (76%), Gaps = 2/167 (1%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK IP++LMGCGGVGR L+QHIVSCRSLHAK GVH+RV+GVCDSKSLVA  DV   ELND
Sbjct: 1   MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 61  AFLSEVCRVKLNGSSLSTLADFDE--CLVYSNSESKRKVIDIAALLGKSTGLAFVDCSAS 118
             LSEVC +K  GS+LS L   ++    V  +SE   +  +IA LLGKSTGLA VDCSAS
Sbjct: 61  ELLSEVCLIKSTGSALSKLGALEKGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSAS 120

Query: 119 SETIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
            ETI +L + VDL CCIVLANKKP+TSTLE YDKL  +PR IRHEST
Sbjct: 121 METIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHEST 167