Jatropha Genome Database

JcCB0107371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107371.10 + phase: 0 /partial
         (116 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34570.1 | Symbols: THY-2 | THY-2 (thymidylate synthase 2); d...   178   6e-46
AT2G16370.1 | Symbols: THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); d...   176   2e-45
AT2G21550.1 | Symbols:  | bifunctional dihydrofolate reductase-t...   112   6e-26

>AT4G34570.1 | Symbols: THY-2 | THY-2 (thymidylate synthase 2);
           dihydrofolate reductase/ thymidylate synthase |
           chr4:16511129-16514110 REVERSE
          Length = 565

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 93/109 (85%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSADMGLGVPFNIASY+LLTCI++HVCDLVPGDF+HV+GDAHVY+ HVR 
Sbjct: 457 NGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIGDAHVYKNHVRP 516

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                        +LKINPEKK+IDSFVA DF+LIGYDPH+KI+MKMA+
Sbjct: 517 LQEQLENPPKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV 565


>AT2G16370.1 | Symbols: THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1);
           dihydrofolate reductase/ thymidylate synthase |
           chr2:7082038-7084333 REVERSE
          Length = 519

 Score =  176 bits (446), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 91/108 (84%)

Query: 9   GELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRXX 68
           GELSCQMYQRSADMGLGVPFNIASY+LLTC+++HVCDLVPGDF+HVLGDAHVY+THVR  
Sbjct: 412 GELSCQMYQRSADMGLGVPFNIASYSLLTCMLAHVCDLVPGDFIHVLGDAHVYKTHVRPL 471

Query: 69  XXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                       ++KINPEKK IDSFVA+DF L GYDPH+KIEMKMA+
Sbjct: 472 QEQLLNLPKPFPVMKINPEKKQIDSFVASDFDLTGYDPHKKIEMKMAV 519


>AT2G21550.1 | Symbols:  | bifunctional dihydrofolate
           reductase-thymidylate synthase, putative / DHFR-TS,
           putative | chr2:9227209-9230189 FORWARD
          Length = 492

 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 69/95 (72%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGE+SCQ+YQ S +  +G+PF+IA+Y+LLTCI++HVCDL  GDF+HV+G A++ + HV+ 
Sbjct: 396 NGEVSCQIYQSSTEASIGIPFSIATYSLLTCIIAHVCDLGAGDFIHVIGQAYINKAHVKA 455

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLI 102
                        ILKINPEKK +D+F A+D +L+
Sbjct: 456 IQKQLQISPKPFPILKINPEKKKMDNFEASDLELM 490