Jatropha Genome Database

JcCB0106871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.20 - phase: 0 /partial
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38240.2 | Symbols: CGL1, CGL, GNTI | CGL1 (COMPLEX GLYCAN LE...   162   5e-41
AT4G38240.1 | Symbols: CGL1, CGL, GNTI | CGL1 (COMPLEX GLYCAN LE...   162   5e-41

>AT4G38240.2 | Symbols: CGL1, CGL, GNTI | CGL1 (COMPLEX GLYCAN LESS
           1); alpha-1,3-mannosylglycoprotein
           2-beta-N-acetylglucosaminyltransferase/ protein
           N-acetylglucosaminyltransferase/ transferase,
           transferring glycosyl groups | chr4:17932006-17935209
           REVERSE
          Length = 444

 Score =  162 bits (409), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 81/89 (91%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD + V  ERPGEL AYYKIARHYKWALDQLFYKH FSRVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDFEPVVTERPGELTAYYKIARHYKWALDQLFYKHKFSRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
           AA L+D+DK+IMA SSWNDNGQKQFV+DP
Sbjct: 225 AASLMDRDKTIMAASSWNDNGQKQFVHDP 253


>AT4G38240.1 | Symbols: CGL1, CGL, GNTI | CGL1 (COMPLEX GLYCAN LESS
           1); alpha-1,3-mannosylglycoprotein
           2-beta-N-acetylglucosaminyltransferase/ protein
           N-acetylglucosaminyltransferase/ transferase,
           transferring glycosyl groups | chr4:17932006-17935209
           REVERSE
          Length = 444

 Score =  162 bits (409), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 81/89 (91%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD + V  ERPGEL AYYKIARHYKWALDQLFYKH FSRVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDFEPVVTERPGELTAYYKIARHYKWALDQLFYKHKFSRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
           AA L+D+DK+IMA SSWNDNGQKQFV+DP
Sbjct: 225 AASLMDRDKTIMAASSWNDNGQKQFVHDP 253