Jatropha Genome Database

JcCB0106871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.10 + phase: 0 /pseudo/partial
         (219 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01290.1 | Symbols:  | ribose-5-phosphate isomerase | chr2:14...   159   2e-39
AT1G71100.1 | Symbols: RSW10 | RSW10 (RADIAL SWELLING 10); ribos...   147   4e-36
AT3G04790.1 | Symbols:  | ribose 5-phosphate isomerase-related |...   123   7e-29

>AT2G01290.1 | Symbols:  | ribose-5-phosphate isomerase |
           chr2:149192-149989 REVERSE
          Length = 265

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 15/152 (9%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           DELK+IAAY+ V+FV+SG+VLGL   ST K+ +DRI  LL       N +GIPTSKKT +
Sbjct: 34  DELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLE-NIVGIPTSKKTQE 92

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            AL LGIPLSDLD+HP +DL  +  D+VD +LNL+KGRGGSLLREKMIE    S+ + +I
Sbjct: 93  QALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIE--GASKKFVVI 150

Query: 121 LE------------LIKPAETLPFCWKFTQER 140
           ++            L  P E +PFCWKFT E+
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEK 182


>AT1G71100.1 | Symbols: RSW10 | RSW10 (RADIAL SWELLING 10);
           ribose-5-phosphate isomerase | chr1:26814726-26815529
           FORWARD
          Length = 267

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 113/180 (62%), Gaps = 24/180 (13%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           +ELKKIAAY+ V+FV+SG+V+GL   ST K+ + RI+ LL       + IGIPTS  TH+
Sbjct: 30  EELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLK-DIIGIPTSTTTHE 88

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            A+ LGIPLSDLDSHP VDL  +  D+VD  LNL+KGRGGSLLREKMIE    S+ + +I
Sbjct: 89  QAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIE--GASKKFVVI 146

Query: 121 LE---LIK---------PAETLPFCWKFT--------QERCLVAKLRRNGDSKNGEPLSP 160
           ++   L+K         P E +PFC  FT        ++   VAKLR    S NGE  +P
Sbjct: 147 VDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGS-NGEEAAP 205


>AT3G04790.1 | Symbols:  | ribose 5-phosphate isomerase-related |
           chr3:1313365-1314195 FORWARD
          Length = 276

 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 25/174 (14%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           D+LKK+AA + V+ ++ G+VLGL   ST  + +D+I  LL       + +GIPTSK+T +
Sbjct: 46  DDLKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELY-DIVGIPTSKRTEE 104

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            A  LGIPL  LD+HP +DL  +  D+VD  L+L+KGRGG+LLREKM+E +    + F++
Sbjct: 105 QARSLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAV---ADKFIV 161

Query: 121 LE-------------LIKPAETLPFCWKFT--------QERCLVAKLRRNGDSK 153
           +              L  P E + FCW F         +E    +KLR +GD K
Sbjct: 162 VADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGK 215