Jatropha Genome Database

JcCB0105731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0105731.10 + phase: 0 /partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa pro...   146   3e-36

>AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa
           protein, putative / SRP19, putative |
           chr1:17786779-17788286 REVERSE
          Length = 145

 Score =  146 bits (368), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 74/89 (83%)

Query: 1   KTIAEGRRISTAKACENPTCVEIGDCCSHLKVPFANEIDKAYPRDFMQVGRVRVLLKRED 60
           KT+AEGRRIS +K+CENP C+EI DCC HLK+P A EIDKAYPRDFMQVGRVRV LKRED
Sbjct: 23  KTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPRDFMQVGRVRVQLKRED 82

Query: 61  GTLYNPAIPTRKQLMLHIAALVPRHPGRT 89
           GTL NPAI +RK LM  IA LVPRHP R 
Sbjct: 83  GTLLNPAITSRKHLMQKIAELVPRHPERV 111