Jatropha Genome Database

JcCB0104191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104191.10 + phase: 0 /partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16990.1 | Symbols:  | TENA/THI-4 family protein | chr3:57959...   243   5e-65

>AT3G16990.1 | Symbols:  | TENA/THI-4 family protein |
           chr3:5795937-5796783 REVERSE
          Length = 221

 Score =  243 bits (619), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 134/175 (76%)

Query: 1   QDYIFVREFVPFVASVLLKACKNSEDGNDMEVILGGLASLNDEIAWFKSEASKWDVSLSN 60
           QDY+FVR FVPFVASVL++ACK+S + +DMEV+LGG+ASLNDEI WFK E SKWDV  S 
Sbjct: 46  QDYLFVRRFVPFVASVLIRACKDSGESSDMEVVLGGIASLNDEIEWFKREGSKWDVDFST 105

Query: 61  TVVHKANQTYCRFLESLMSREVEYALALTALWAIEATYQESFAHCLEDGSKTPPELQETC 120
            V  +ANQ Y RFLE LMS EV+Y + +TA WAIEA YQESFAHCLEDG+KTP EL   C
Sbjct: 106 VVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGAC 165

Query: 121 RRWGNEGFGEYCRSLKKIANRYLEKASADVIAKAEVTLLHVLEHEVEFWNMSHRG 175
            RWGN+GF +YC S+K IA R LE AS +V+ +AE  L+ VLE EV FW MS  G
Sbjct: 166 HRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLVRVLELEVAFWEMSRGG 220