Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103991.20 - phase: 1 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08800.2 | Symbols:  | unknown protein | chr1:2813578-2817078...    60   2e-10
AT1G08800.1 | Symbols:  | unknown protein | chr1:2813578-2817078...    60   2e-10
AT1G70750.1 | Symbols:  | unknown protein | chr1:26680728-266831...    55   9e-09

>AT1G08800.2 | Symbols:  | unknown protein | chr1:2813578-2817078
            REVERSE
          Length = 1113

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 39   VSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIRKEEQ 93
            VS+L+ER++ L+ D  FLE  MNS+  G EGVQFV+EIA HL+ LR + +++++Q
Sbjct: 1056 VSELHERVERLKGDLYFLEQVMNSLGHGNEGVQFVKEIASHLQTLRSLSMKRQDQ 1110


>AT1G08800.1 | Symbols:  | unknown protein | chr1:2813578-2817078
            REVERSE
          Length = 1113

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 39   VSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIRKEEQ 93
            VS+L+ER++ L+ D  FLE  MNS+  G EGVQFV+EIA HL+ LR + +++++Q
Sbjct: 1056 VSELHERVERLKGDLYFLEQVMNSLGHGNEGVQFVKEIASHLQTLRSLSMKRQDQ 1110


>AT1G70750.1 | Symbols:  | unknown protein | chr1:26680728-26683147
           REVERSE
          Length = 749

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 34  SLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIRK 90
           ++  EV +L ERL+ALEADR FL H + S++ G +GV  + EI  HL++LR I + +
Sbjct: 684 TIEEEVDELYERLEALEADREFLRHCVGSLKKGDKGVHLLHEILQHLRDLRNIDLTR 740