Jatropha Genome Database
- JcCB0103991.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0103991.10 - phase: 0
(369 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35733.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 84 2e-16
AT1G65770.1 | Symbols: AMR1 | F-box family protein | chr1:244606... 77 2e-14
AT2G17030.1 | Symbols: | F-box family protein | chr2:7399108-74... 76 4e-14
AT1G64840.1 | Symbols: | F-box family protein | chr1:24094010-2... 69 4e-12
AT2G17036.1 | Symbols: | F-box family protein | chr2:7403856-74... 69 5e-12
AT1G65740.1 | Symbols: | F-box family protein | chr1:24452096-2... 69 6e-12
AT2G26160.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 68 8e-12
AT1G65760.1 | Symbols: | F-box family protein | chr1:24458591-2... 68 9e-12
AT3G25750.1 | Symbols: | F-box family protein | chr3:9400955-94... 65 5e-11
AT2G24250.2 | Symbols: | F-box family protein | chr2:10313436-1... 64 2e-10
AT2G24250.1 | Symbols: | F-box family protein | chr2:10313436-1... 64 2e-10
AT5G60060.1 | Symbols: | F-box family protein | chr5:24188600-2... 61 1e-09
AT2G16290.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 5e-09
AT1G44080.1 | Symbols: | F-box protein-related / C-type lectin-... 55 8e-08
AT2G17690.1 | Symbols: SDC | SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) ... 53 3e-07
>AT4G35733.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cyclin-like F-box (InterPro:IPR001810), Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: F-box
protein-related / C-type lectin-related
(TAIR:AT1G44080.1); Has 92 Blast hits to 87 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr4:16934426-16935502 FORWARD
Length = 358
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 168/373 (45%), Gaps = 61/373 (16%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYFREES 87
S+LP E+L IA L + ++ RF ++CK+FRS+V +SD L L R
Sbjct: 8 SDLPGELLDHIANGLFSKVELLRFRSICKTFRSAV-------DSDKNFLD-HLKRNRRRL 59
Query: 88 LPGYTT-----IDLKTFY-LLRHSPSSESCLVKVS-GVSSGQEPPSSAIVRY-LKTRPLE 139
L Y+T + FY ++ S + L+K+ S Q+ S + R+ +K+
Sbjct: 60 LSPYSTGKTCSLSPAAFYRVVLSSYPDKGWLIKLQDAYVSSQKQLLSPLSRFSIKSSGKT 119
Query: 140 LNLIDFSVSELHKHY-------------FATMYELTGDDEFYSEDTVSKIVVIGRKDELA 186
L+L++F+VSE+H+ Y F + +D + D KI +
Sbjct: 120 LDLLEFTVSEIHQSYDVEYLYYNSTRASFNFARVVLAEDFVFIVDNYKKIWLCNSN---- 175
Query: 187 AMAIYGLEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQGGSGKLIKIDVSSSKAM 246
E + W+R+ DE + + DI+ +KG YA+ +G + I +S
Sbjct: 176 -------ESDSHWVRIMDE-----EVKLFSDIVFHKGYMYALD-LTGAVWWISLSEFGIF 222
Query: 247 KVVVPNLLNGSCGCS--SEKNLVESGGELLLLDRDMKGNKL-----------RVYKANEE 293
+ + C +K VE G+L ++ R + ++ +VYK +EE
Sbjct: 223 QFGPSSTPMDYCDIDECKDKRFVEYCGDLCIVHRFSRKFRIKRVDIDMTVGFKVYKMDEE 282
Query: 294 EGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLYVEKDGFEMFNLDDGSYSV 353
++VE+KSLGD+ V+ FSV AR+ G C N + + E++ ++F L DGS +
Sbjct: 283 LVEYVEVKSLGDKAFVMAT-DSCFSVLAREYYG-CLENSIYFTEQNNVKVFKLGDGSITN 340
Query: 354 LHSTDFPPIFKWL 366
+ + F F+ L
Sbjct: 341 MVDSSFQSCFQML 353
>AT1G65770.1 | Symbols: AMR1 | F-box family protein |
chr1:24460656-24461738 REVERSE
Length = 360
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 161/364 (44%), Gaps = 53/364 (14%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKL-------PL 80
S LP ++L IA L + ++ RF ++C+S+RSSV G + R L L PL
Sbjct: 5 STLPVDLLNMIAGRLFSNIELKRFRSICRSWRSSVPGAGKKNPFRTRPLILLNPNPNKPL 64
Query: 81 IYFREESLPGYTTIDLKTFY--LLRHSPSSESCLVKVSGVSSGQ----EPPSSAIVRYLK 134
R + F+ L SPS + VSSG+ +P S + + +
Sbjct: 65 TDHRRRG----EFLSRSAFFRVTLSSSPSQGWLIKSDVDVSSGKLHLLDPLSRLPMEHSR 120
Query: 135 TRPLELNLIDFSVSELHKHYFATMYELTGDDEFYSEDTVSKIVVIGRKDELAAMAIYGLE 194
R ++L +F+++E+ + Y + + + ++ ++ KD+ + G+
Sbjct: 121 KR---VDLSEFTITEIREAYQVHDWRTRKE----TRPIFKRVALV--KDKEGDNQVLGIR 171
Query: 195 VELAWIRLGDERWTAMNE-QDYDDIINYKGQFYAVQGGSGKLIKIDVSSSKAMKVVVPNL 253
+ + W A E ++ DII +KGQ YA+ I I +K +
Sbjct: 172 STGKMMYWDIKTWKAKEEGYEFSDIIVHKGQTYALDS-----IGIVYWIRSDLKFIRFGP 226
Query: 254 LNGSCGCSSEKNLVESGGELLLLDRDM-----------------KGNKLRVYKANEEEGK 296
L G + ++ LVE GE +++R + K +VYK ++E+GK
Sbjct: 227 LVGDW--TGDRRLVECCGEFYIVERLVGESTWKRKADDTGYEYAKTVGFKVYKFDDEQGK 284
Query: 297 WVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLYVEKDGFEMFNLDDGSYSVLHS 356
+E+KSLGD+ V+ FSV A + G C N + + + ++F LD+G+ S + +
Sbjct: 285 MMEVKSLGDKAFVIAT-DTCFSVLAHEFYG-CLENAIYFTDDTMIKVFKLDNGNGSSIET 342
Query: 357 TDFP 360
T +P
Sbjct: 343 TIYP 346
>AT2G17030.1 | Symbols: | F-box family protein |
chr2:7399108-7400650 FORWARD
Length = 407
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 154/356 (43%), Gaps = 66/356 (18%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLI-----Y 82
S LP+++L I++SL++ D +F +VC S+RS+ + S + LP++
Sbjct: 5 STLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAA-----EPKSPLPTHHLPILPDNGGS 59
Query: 83 FREESLPGYTTIDLKTFYLLRHSPSSES----CLVKVSGVSSGQEPPSSAIVRYL-KTR- 136
+S G+ + H P ES L+KV P ++ L TR
Sbjct: 60 LFPDSAVGFRLSQRSILLIKPHEPCIESDSFGWLIKVE--EDLNVPRKVTLLDPLCDTRN 117
Query: 137 ------PLELNLIDFSVSELHK----HYFATMYELTGDDEFYSEDTVSKIVVIGRKDELA 186
P L++ F V EL + HYF T+ ++ + Y E V K + +
Sbjct: 118 SIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIV--ESLYLEKAVVKYLDCDGDYKFV 175
Query: 187 AMAIYGLEVELAWIRLGDERWTAMNEQD--YDDIINYKGQFYAVQGGSGKLIKIDVSSSK 244
+ I+ + +LA R D WT +N+ YDD++ + G+F+AV +G+ + +D SS K
Sbjct: 176 LLTIH-VSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDN-NGRTVVVDYSSLK 233
Query: 245 AMKVVVPNLLNGSCGCSSEKNLVESGGELLLLDR-------------------------D 279
V P + G +K L+ES GE+LL+D +
Sbjct: 234 LTLVASP-VFGGD-----KKFLIESCGEMLLVDMYLSLEAVEGDPGFVEEIFEHPAFYMN 287
Query: 280 MKGNKLRVYKANEEEGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLY 335
+ K +VY+ E E WV++ L D+ + + + FS A D+ C + V +
Sbjct: 288 ERTVKFKVYRFVEREESWVDVYDLEDKMLFLGD-DSTFSASASDILPLCDGSSVFF 342
>AT1G64840.1 | Symbols: | F-box family protein |
chr1:24094010-24095164 FORWARD
Length = 384
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 50/356 (14%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLP-LIYFREE 86
S+LP+E+L I+++LDN D ++C+S+RS+ F F + S LP F
Sbjct: 6 SQLPEELLNLISKNLDNCFDVVHARSICRSWRSA---FPFPSSLSTLSYSLPTFAKFPLV 62
Query: 87 SLPGYTTIDLKTFYLLRHSPSSESCLVKVSGVSSGQ-----EPPS----SAIVRYLKTRP 137
S T ++ F +P+++ + G+ Q E PS S V++ ++ P
Sbjct: 63 SKDLCTLKKIQIFLFRARNPAADIPEYFLGGIDQDQSNDHMELPSPLQCSVKVKFPQSDP 122
Query: 138 LELNLIDFSVSELHKHYFATMYELTGDDEFYSEDTVSKIVVIGRK---DELAAMAIYGLE 194
+N++D+ + L Y + D E + V + +K DE + Y
Sbjct: 123 FLVNMLDYQIIPLGFQYIMIGW----DPESLANGYVGVAFLPVKKNGGDEFVVLLRY--R 176
Query: 195 VELAWIRLGDERWTAMNEQDYDD---IINYKGQFYAVQGGSGKLIKIDVSSSKAMKVVVP 251
L +R + RW + + +++++G+FY V +G + D S +
Sbjct: 177 NHLLVLRSSEMRWMKVKKTSIASCKGLVSFRGRFY-VTFLNGDIYVFDPYSLEQ------ 229
Query: 252 NLLNGSCGCSSEKNLVESGG-ELLLLDR----------DMKGNKLRVYKANEEEGKWVEI 300
LL S S K L+ +G EL L+++ D+ RV + +EE G+WVE+
Sbjct: 230 TLLMPSEPLRSSKYLIPNGSDELFLVEKFNPFPEADVLDLSRFACRVSRLDEEAGQWVEV 289
Query: 301 KSLGDRTVVVKEWRWAFSVC--ARDLGGSC--KSNCVLYVEKDGFEMFNLDDGSYS 352
LGDR + + + +VC A++L C N +L+ + G+ F G ++
Sbjct: 290 IDLGDRVLFIGHFG---NVCCSAKELPDGCGVSGNSILFTNEPGYVTFAYKYGVHT 342
>AT2G17036.1 | Symbols: | F-box family protein |
chr2:7403856-7405219 FORWARD
Length = 428
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 67/347 (19%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYFREES 87
+ LP+++L I++ L++ D +F +VC S+RS+ + + L +F +
Sbjct: 4 ATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHN-------LPFFPSDD 56
Query: 88 LPGYTTIDLKTFY--LLRHSPSSESC-------LVK------VSGVSSGQEPPSSAIVRY 132
P + + L+ + +L P+ C +VK VS + +P SS+ +
Sbjct: 57 KPFLSNVILRVAHQSILLIKPNEPQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSSRNYF 116
Query: 133 LKTRPLELNLIDFSVSELHKH---YFATMYELTGDDEFYSEDTVSKIVVIGRKDE---LA 186
+ P ++ F+V EL + Y Y + G E + K VV D+ L
Sbjct: 117 PQHLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTAL--ELELGKTVVKYLNDDKFVLL 174
Query: 187 AMAIYGLEVELAWIRLGDERWTAMNEQDY-----DDIINYKGQFYAVQGGSGKLIKIDVS 241
+ YG +LA R D WT +N DY D+I + G+F+A+ +G+ + +D S
Sbjct: 175 TILEYG---KLAVFRSWDREWTVIN--DYIPSRCQDLIMFDGRFFAID-YNGRTVVVDYS 228
Query: 242 SSKAMKVVVPNLLNGSCGCSSEKNLVESGGELLLLDRDMKGN------------------ 283
S K P + G +K L+ES GE+ L+D + N
Sbjct: 229 SFKLTLAANPLI-----GGGDKKFLIESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTV 283
Query: 284 --KLRVYKANEEEGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSC 328
K + +K E E +WVE++ LGD+ + + FS D+ C
Sbjct: 284 SYKFKFFKLVEREKRWVEVEDLGDKMFFLGD-DSTFSASTADIIPRC 329
>AT1G65740.1 | Symbols: | F-box family protein |
chr1:24452096-24453211 REVERSE
Length = 371
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 158/372 (42%), Gaps = 69/372 (18%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYFREES 87
S LP+E+L IA + ++Y RF ++C S+ SSV G + N +R PLI F +
Sbjct: 5 STLPEELLHFIAARSFSLVEYKRFSSICVSWHSSVSGV--KKNPFHRR---PLIDFNPIA 59
Query: 88 LPGYTTIDLKTF---------------YLLRHSPSSESCLVKVSGVSSGQEPPSSAIVRY 132
P T ++ F L SPS + +SG+ + + R+
Sbjct: 60 -PSETLLEDHVFSCNPGAFLSRAAFFRVTLSSSPSKGWIIKSDMDTNSGRFHLLNPLSRF 118
Query: 133 -LKTRPLELNLIDFSVSELHKHYFATMYELTG--DDEFYSEDTVSK----------IVVI 179
L+ L+L+DF+VSE+ + Y A + + G + Y + K I+ I
Sbjct: 119 PLRISSESLDLLDFTVSEIQESY-AVLKDAKGRLPNPGYQRSALVKVKEGDDHHHGILGI 177
Query: 180 GRKDELAAMAIYGLEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQG-GSGKLIKI 238
GR + + V + ++G + DII +KG Y + G I
Sbjct: 178 GRD---GTINYWNGNVLNGFKQMG---------HHFSDIIVHKGVTYVLDSKGIVWCINS 225
Query: 239 DVSSSKAMKVVVPNLLNGSCGCSSE-KNLVESGGELLLLDRDMKGNK------------- 284
D+ S+ + N+ NG C V+ GEL ++ R K N
Sbjct: 226 DLEMSRYETSLDENMTNG---CRRYYMRFVDCCGELYVIKRLPKENSRKRKSTLFQFSRT 282
Query: 285 --LRVYKANEEEGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLYVEKDGFE 342
+VYK ++E KWVE+K+LGD V+ FSV A + G C N + ++E +
Sbjct: 283 AGFKVYKIDKELAKWVEVKTLGDNAFVMAT-DTCFSVLAHEYYG-CLPNSIYFIEDLEPK 340
Query: 343 MFNLDDGSYSVL 354
+F LD+G+ S +
Sbjct: 341 VFQLDNGNGSSI 352
>AT2G26160.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cyclin-like F-box (InterPro:IPR001810), Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT3G25750.1); Has 179 Blast hits to 177
proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 179; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr2:11138456-11139451 REVERSE
Length = 331
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 66/345 (19%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSV---HGFNFQYNSDYRSLKL---PLI 81
SELP +++ A + D R ++CK +RS+ F S + ++ P
Sbjct: 7 SELPGDLINLTANRFSSISDVLRVRSICKPWRSAAATPKSFQCNLPSSNKMIETVLSPTT 66
Query: 82 YFREESLPGYTTIDLKTFYLLRHSPSSESCLVKVSGVSSGQEPPSSAIVRYLKTRPLE-L 140
+FR + G ++ K +L+R SES + + S R L T + L
Sbjct: 67 FFR---VTGPSSCSYKG-WLIRTKQVSESSKINLL----------SPFFRQLLTPSQQTL 112
Query: 141 NLIDFSVSELHKHYFATMYELTGDDEFYSEDTVSK----------------IVVIGRKDE 184
+L+ F VSE+ + Y E+ D++ + + K I +G+ D+
Sbjct: 113 DLLKFEVSEIRQSY-----EIHIFDKYLIQGVIGKEGPSHILSRVVFLDNLIFAVGQDDK 167
Query: 185 LAAMAIYGLEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQGGSGKLIKIDVSSSK 244
+ G E W ++ ++ +D+ DII +KGQ YA+ +G + I +S
Sbjct: 168 IWCCK-SGEESSRIWTKIKNQ------VEDFLDIILHKGQVYALDL-TGAIWWISLSPLS 219
Query: 245 AMKVV--VPNLLNGSCGCSSEKNLVESGGELLLLD----------RDMKGNKLRVYKANE 292
++ +P +G C+ K LVE G+L ++ R + +VYK +E
Sbjct: 220 LLQFTPSIPMDYDGYDSCN--KRLVEYCGDLCIIHQLRLKKAYIRRSQRTVGFKVYKMDE 277
Query: 293 EEGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLYVE 337
KWVE++SLGD+ ++V F+V A + G C +N + +V+
Sbjct: 278 YVAKWVEVRSLGDKALIVAR-DSCFTVVASEYHG-CLNNSIYFVD 320
>AT1G65760.1 | Symbols: | F-box family protein |
chr1:24458591-24459715 FORWARD
Length = 362
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 158/367 (43%), Gaps = 71/367 (19%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYF---- 83
S LP+E+L I L + ++ RF ++C+S+RSS G N N+ + S P I+F
Sbjct: 7 SNLPEELLHMIVLLLFSVVELKRFRSICRSWRSSTSGVN--RNNPFPSR--PRIHFDPID 62
Query: 84 REESL---------PGYTTIDLKTFYLLRHSPSSESCLVKVS-GVSSGQEPPSSAIVRY- 132
E+L PG F + S SS+ ++K ++SG+ + + RY
Sbjct: 63 PSETLSSDDSYISRPGAFLSRAAFFRVTLSSSSSKGWMIKSDMDINSGRFRLLNVLSRYP 122
Query: 133 LKTRPLELNLIDFSVSELHKHY--FATMYELTGDDEFYSEDTVSKIVVIGRKDELAAMAI 190
L+ ++L++F+VSE+ + Y T + + V G +D + +
Sbjct: 123 LRLYSESIDLLEFTVSEIREAYTVLNTAKRRSATKGYQRSAPVKVKEGEGHRDGVLGIGR 182
Query: 191 YG--------LEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQGGSGKLIKIDVSS 242
G + EL ++GD + DII +KG LI D+
Sbjct: 183 DGNINYWDGNVLSELK--QMGDH---------FSDIIVHKG-----------LINSDLEI 220
Query: 243 SKAMKVVVPNLLNGSCGCSSEKNLVESGGELLLLDRDMKGNKLR---------------V 287
S+ + N+ +G C + VE GEL +++R K + R
Sbjct: 221 SRFGTSLDENITDG---CWGDLRFVEGCGELYIVERLPKNTRKRKAGDFFHNSRTVGFKA 277
Query: 288 YKANEEEGKWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLYVEKDGFEMFNLD 347
YK +EE KW+EIK+LGD ++ FSV A ++ G C N + Y E ++ L+
Sbjct: 278 YKMDEELAKWIEIKTLGDNAFLMGT-DTCFSVLAHEVYG-CLPNSIYYTENTWPKVCKLE 335
Query: 348 DGSYSVL 354
DG+ S +
Sbjct: 336 DGNGSSI 342
>AT3G25750.1 | Symbols: | F-box family protein |
chr3:9400955-9402088 FORWARD
Length = 348
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 154/357 (43%), Gaps = 72/357 (20%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVH------GFNFQY-----NSDYRSL 76
S+LP+E+L IA + +D R + CKS+RS+V F F+ N ++
Sbjct: 7 SDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSAVAMSKERLQFRFERYLPTSNKKIKAH 66
Query: 77 KLPLIYFREESLPGYTTIDLKTFYLLRHSPSSE-----SCLVKVSGVSSGQEPPSSAIVR 131
P +FR +LP +L+R +S+ + L +SG I R
Sbjct: 67 LSPTTFFRI-TLPSSCP---NKGWLVRTRQASKMYRKITLLCPLSG---------ERITR 113
Query: 132 YLKTRPLELNLIDFSVSELHKHYFATMYELTGDDEFYSEDTVSKIVVIGRKDELAAMAIY 191
+T L+L+ VSE+ + Y +++ D++ + + I D++ +
Sbjct: 114 SHQT----LDLLKVGVSEIRQSYEIQIFDGLKDEKIPLDSEIFS-NYIKNSDKIPSE--- 165
Query: 192 GLEVELAWIRLGDERWTAMNEQ--DYDDIINYKGQFYAVQGGSGKLIKIDVSSSKAMKVV 249
G WT + Q D+ DII + G+ YAV G + I +S ++
Sbjct: 166 -----------GSRSWTKIKNQVEDFSDIILHMGRIYAV-DLKGAIWWISLSQLTIVQQT 213
Query: 250 VPNLLN----GSCGCSSEKNLVESGGELLLL-------DRDMKGNKLRVYKANEEEGKWV 298
L+ SC + LVE G+L ++ + + +VYK +E+ KWV
Sbjct: 214 SSTPLDYYKYDSC---QDTRLVEYCGDLCIVHELSITRNHIQRTVGFKVYKMDEDLAKWV 270
Query: 299 EIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVLY----VEK-DGFEMFNLDDGS 350
E+ LGD T++V F+V A + G C N + + V+K + ++F LDDGS
Sbjct: 271 EVSCLGDNTLIV-ACNSCFTVVASEYHG-CLKNSIYFSYYDVKKAENIKVFKLDDGS 325
>AT2G24250.2 | Symbols: | F-box family protein |
chr2:10313436-10314560 REVERSE
Length = 374
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 134/330 (40%), Gaps = 63/330 (19%)
Query: 28 SELPQEILAQIAESL-DNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYFREE 86
S+LP+E+L I+ L D+Y D +VC+S+RS+ F F + +S LP +
Sbjct: 17 SQLPEELLHIISTHLEDHYFDAVHARSVCRSWRST---FPFPSSLLRQSYSLPAFPLESK 73
Query: 87 SLPGYTTIDLKTFYLLR-------HSPSSESCLVKVSGVSSGQ--EPPS----SAIVRYL 133
L T++ +L R SSE L + S E PS S V
Sbjct: 74 DL--CCTLEKVPLFLFRVLTPPDAADASSEYFLGGLGQDKSNDHVELPSPLQCSVKVNVP 131
Query: 134 KTRPLELNLIDFSVSELHKHY--------------FATMYELTGDDEFYSEDTVSKIVVI 179
T P+ +N++D + L Y F + E G EF + + + ++
Sbjct: 132 GTEPILMNMLDCQIIPLGHKYRLMIGCNPEEYSAAFLPLNEQGGGGEFVALLDCTDLFLV 191
Query: 180 GRKDELAAMAIYGLEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQGGSGKLIKID 239
R E+ WIRL + E + ++G+FYA +G ID
Sbjct: 192 LRS------------TEMRWIRLEKPSTASCKE-----LFTFRGRFYAT-FFNGDTFVID 233
Query: 240 VSSSKAMKVVVPNLLNGSCGCSSEKNLVESGGE-LLLLDRDMKGNKLRVYKANEEEGKWV 298
SS +A + P++ LV SG E L L+ D + RV + +EE +WV
Sbjct: 234 PSSLEATPLT-PHI--------DSNFLVPSGNEELFLVKTDFL--RCRVSRLDEEAAEWV 282
Query: 299 EIKSLGDRTVVVKEWRWAFSVCARDLGGSC 328
E+ LGDR + + F A++L C
Sbjct: 283 EVSDLGDRVLFLGGHLGNFYCSAKELPHGC 312
>AT2G24250.1 | Symbols: | F-box family protein |
chr2:10313436-10314560 REVERSE
Length = 374
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 134/330 (40%), Gaps = 63/330 (19%)
Query: 28 SELPQEILAQIAESL-DNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLPLIYFREE 86
S+LP+E+L I+ L D+Y D +VC+S+RS+ F F + +S LP +
Sbjct: 17 SQLPEELLHIISTHLEDHYFDAVHARSVCRSWRST---FPFPSSLLRQSYSLPAFPLESK 73
Query: 87 SLPGYTTIDLKTFYLLR-------HSPSSESCLVKVSGVSSGQ--EPPS----SAIVRYL 133
L T++ +L R SSE L + S E PS S V
Sbjct: 74 DL--CCTLEKVPLFLFRVLTPPDAADASSEYFLGGLGQDKSNDHVELPSPLQCSVKVNVP 131
Query: 134 KTRPLELNLIDFSVSELHKHY--------------FATMYELTGDDEFYSEDTVSKIVVI 179
T P+ +N++D + L Y F + E G EF + + + ++
Sbjct: 132 GTEPILMNMLDCQIIPLGHKYRLMIGCNPEEYSAAFLPLNEQGGGGEFVALLDCTDLFLV 191
Query: 180 GRKDELAAMAIYGLEVELAWIRLGDERWTAMNEQDYDDIINYKGQFYAVQGGSGKLIKID 239
R E+ WIRL + E + ++G+FYA +G ID
Sbjct: 192 LRS------------TEMRWIRLEKPSTASCKE-----LFTFRGRFYAT-FFNGDTFVID 233
Query: 240 VSSSKAMKVVVPNLLNGSCGCSSEKNLVESGGE-LLLLDRDMKGNKLRVYKANEEEGKWV 298
SS +A + P++ LV SG E L L+ D + RV + +EE +WV
Sbjct: 234 PSSLEATPLT-PHI--------DSNFLVPSGNEELFLVKTDFL--RCRVSRLDEEAAEWV 282
Query: 299 EIKSLGDRTVVVKEWRWAFSVCARDLGGSC 328
E+ LGDR + + F A++L C
Sbjct: 283 EVSDLGDRVLFLGGHLGNFYCSAKELPHGC 312
>AT5G60060.1 | Symbols: | F-box family protein |
chr5:24188600-24189724 REVERSE
Length = 374
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 48/333 (14%)
Query: 28 SELPQEILAQIAESLD----NYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKLP---L 80
S+LP +IL I++ LD + + +VC ++R S+ N + R K P
Sbjct: 12 SDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLP----LSNKNNRLSKFPKYLP 67
Query: 81 IYFREESLPGYTTIDLKTFYLLRHSPSSESCLVKVSGVSSGQEP-----PSSAIVRYLKT 135
+ S G+ T+ Y L + +CLVK+ + G + I +
Sbjct: 68 FWSSSSSSSGFFTLKQSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPEN 127
Query: 136 RPLELNLIDFSVSELHKHYFATMYELTGDDE---FYSEDTVSKIVVIGRKDELAAMAIYG 192
P +++L +F V + + Y Y G F+S + K+V++ ++ A +AI+
Sbjct: 128 FPSKIDLQEFHVRLVRRTY-RMEYANNGGGAVPCFWSLHS-DKVVILSSGEDSAIIAIHS 185
Query: 193 LEVELAWIRLG-DERWTAMNEQ---DYDDIINYKGQFYAVQGGSGKLIKIDVSSSKAMKV 248
+L +++ G DE+W ++ Y+DI+ YK V GK + DV
Sbjct: 186 -GGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVDFK----- 239
Query: 249 VVPNLLNGSCGCSS-EKNLVE-SGGELLLLDRDMKGN-----------KLRVYKANEEEG 295
V +L G G +K+LVE SGGE+ L+D+ +K + RVY EE
Sbjct: 240 -VSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYVKTVWCKSDISKSVVEFRVYNLKREEK 298
Query: 296 KWVEIKSLGDRTVVVKEWRWAFSV--CARDLGG 326
+W E++ LGD + + + +FSV A DL G
Sbjct: 299 RWEEVRDLGDVALFIGD-DCSFSVQNPAGDLAG 330
>AT2G16290.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cyclin-like F-box (InterPro:IPR001810), Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT2G16300.1); Has 107 Blast hits to 100
proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 107; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr2:7058930-7060573 REVERSE
Length = 415
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 152/373 (40%), Gaps = 65/373 (17%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFN-----------FQYNSDYRSL 76
S LP ++L I L+ + F +VC+S+RS V + +N+ +
Sbjct: 5 SLLPNDLLELIVGHLETSFEIVLFRSVCRSWRSVVPPLDHSRCLGIKTHDISFNAGFTFS 64
Query: 77 KLPLIYFREESLPGYTTIDLK----TFYLLRH-SPSSESCLVKVSGVSSGQEP------- 124
P + P +++D YL++ +P + L+ G EP
Sbjct: 65 DQP-----TDQPPFKSSVDCTLKNIPIYLVKFWTPYGDDYLIAEMREREGGEPKLLLSPL 119
Query: 125 PSSAIVRYLKTRPLELNLIDFSVSELHKHY-------------FATMYELTGDDEFYSED 171
S+ I+ + + N + + ++Y + Y L + E+
Sbjct: 120 SSNRIIYGMGINKVLFNSLTSPIIPFGQYYEITYFKKQPIRYRYGLPYHLWNEVEWVETS 179
Query: 172 TVSKIVVIGRKDELA-AMAIYGLEVELAWIRLGDERWTAMNEQD----YDDIINYKGQFY 226
+ + + +D A+ G L R + WT + E Y D++ +KG+FY
Sbjct: 180 ERVEFLRLHSEDSRDFAVLFAGRMCNLVMYRSRNMSWTQVVEHPETYAYQDLVAFKGKFY 239
Query: 227 AV-QGGSGKLIKIDVSSSKAMKVVVPNLLNGSCGCSSEKNLVESGGELLLLDRDMKGNK- 284
A+ G G++ +++S ++V + GS CS E +LV+ G ELLL+ R + +
Sbjct: 240 ALDSSGRGRVFVVELS----LRVTEIPSVKGSQYCSKE-SLVQLGEELLLVQRFIPAGRR 294
Query: 285 --------LRVYKANEEEG--KWVEIKSLGDRTVVVKEWRWAFSVCARDLGGSCKSNCVL 334
+V++ +EE G KWV++ L DR + + R L G+ NC++
Sbjct: 295 YDEYIYTWFKVFRLDEEGGKRKWVQVNYLNDRVIFLGA-RTKLCCSVHKLPGA-NENCIV 352
Query: 335 YVEKDGFEMFNLD 347
++ + +F+ D
Sbjct: 353 FLASNDGSIFDND 365
>AT1G44080.1 | Symbols: | F-box protein-related / C-type
lectin-related | chr1:16753944-16755670 REVERSE
Length = 347
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 52/345 (15%)
Query: 28 SELPQEILAQIAESLDNYLDYFRFGAVCKSFRSSVHGFNFQYNSDYRSLKL--------- 78
S+L ++++ +A +L + ++ RF ++CK +RS+V +N R+L
Sbjct: 7 SDLHEDLIDLLANNLSSNINLLRFRSICKPWRSTVATKKRLHNHFERNLPTFKKKKTVVS 66
Query: 79 PLIYFREESLPGYTTIDLKTFYLLRHSPSSESCLVKVSGVSSGQE-PPSSAIVRYLKTRP 137
P +FR +LP +L+++ SES + SG+ PS + LK
Sbjct: 67 PSTFFRV-TLPSPCR---NKGWLIKNRQVSESSKNNLLSPLSGKTITPSDKTLDLLKVEC 122
Query: 138 LELNLIDFSVSELHKHYFATMYELTGDDEFYSEDTVSKIVVIGRKDELAAMAIYGLEVEL 197
D S+ +L D D V V+ K+E+ E
Sbjct: 123 FR----DSSILQL----------FADSDRVVFLDNV--FFVVDFKNEIWCCK--SGEETR 164
Query: 198 AWIRLGDERWTAMNEQDYDDIINYKGQFYAVQ-GGSGKLIKIDVSSSKAMKVVVPNLLNG 256
W R+ +E + + DII +KG+ YA+ G+ I + S P
Sbjct: 165 HWTRINNEE-----AKGFLDIILHKGKIYALDLTGAIWWISLSELSIYQYGPSTPVDFYE 219
Query: 257 SCGCSSEKNLVESGGELLLLDRDMKGNKLR-----------VYKANEEEGKWVEIKSLGD 305
C EK LVE GEL ++ R K ++ VYK ++ +WVE+ SLGD
Sbjct: 220 IDNCK-EKRLVEYCGELCVVHRFYKKFCVKRVLTERTVCFKVYKMDKNLVEWVEVSSLGD 278
Query: 306 RTVVVKEWRWAFSVCARDLGGSCKSNCVLYVEKDGFEMFNLDDGS 350
+ ++V F V A + G C N + + +++ +F LDD S
Sbjct: 279 KALIVATDN-CFLVLASEYYG-CLENAIYFNDREDVSVFKLDDCS 321
>AT2G17690.1 | Symbols: SDC | SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) |
chr2:7682818-7684083 FORWARD
Length = 421
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 201 RLGDERWTAMNEQDYDD--IINYKGQFYAV----QGGSGKLIKIDVSSSKAMKVVVPNLL 254
RL DE YDD I++++ Y + G+G + + + V+ NL
Sbjct: 260 RLIDENLLKRKADSYDDNAIVHFRNADYTNADLWEDGNGNDDFFAAQAHRFIHVLHDNLG 319
Query: 255 NGSCGCSSEKNLVESGGELLLLDRDM-KGNKLRVYKANEEEGKWVEIKSLGDRTVVVKEW 313
N SC +RD K +VYK +EE KWVE+KSLGD+ +V+
Sbjct: 320 NVSCKP---------------FERDPPKTIGFKVYKNDEELLKWVEVKSLGDKAIVIAT- 363
Query: 314 RWAFSVCARDLGGSCKSNCVLYVEK--DGFEMFNLDDGSYSVLHSTD 358
FSV A + G C N + + +K + ++F LDDGS + + ++
Sbjct: 364 DACFSVSAHEFYG-CLPNSIYFTDKKEEEVKVFKLDDGSITTMSESE 409