Jatropha Genome Database

JcCB0103441.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103441.10 - phase: 0 
         (274 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65840.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   305   2e-83
AT2G37240.1 | Symbols:  | INVOLVED IN: biological_process unknow...    92   3e-19

>AT5G65840.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Thioredoxin fold
           (InterPro:IPR012335), Thioredoxin-like fold
           (InterPro:IPR012336); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G37240.1); Has 167
           Blast hits to 165 proteins in 51 species: Archae - 0;
           Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59;
           Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
           | chr5:26344097-26346057 REVERSE
          Length = 275

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/215 (66%), Positives = 167/215 (77%), Gaps = 17/215 (7%)

Query: 63  RASASDFGSY---IGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWEL 119
           RA+   F  Y   IGE LGDV+IFTA+G+ V   DLWDQ +GIA V LLRHFGC CCWEL
Sbjct: 75  RAATESFTDYREDIGEILGDVSIFTASGQRVQFSDLWDQKDGIAAVVLLRHFGCVCCWEL 134

Query: 120 ASVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADPDRKAYDVLGLYYG 179
           A+ LKE+K +F++AGVKLIA+GVG P+KARILA RLPFPM+CLYADP+RKAYDVLGLY+G
Sbjct: 135 ATALKEAKPRFDAAGVKLIAVGVGTPDKARILATRLPFPMECLYADPERKAYDVLGLYFG 194

Query: 180 FGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATPDDRSGVLQQGGMF 239
            GRTFFNPAS               KVFSRF  +++A KNYTIEATP+DRS VLQQGG F
Sbjct: 195 LGRTFFNPAST--------------KVFSRFSEIREATKNYTIEATPEDRSSVLQQGGTF 240

Query: 240 VFKGKQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           VF+GK+LLY RKDEGTGDH  LDDV N+CCK  +A
Sbjct: 241 VFRGKKLLYGRKDEGTGDHPSLDDVINVCCKATVA 275


>AT2G37240.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: chloroplast; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 14 growth stages; CONTAINS
           InterPro DOMAIN/s: Thioredoxin fold
           (InterPro:IPR012335), Thioredoxin-like fold
           (InterPro:IPR012336); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G65840.1); Has 252
           Blast hits to 252 proteins in 46 species: Archae - 0;
           Bacteria - 20; Metazoa - 145; Fungi - 10; Plants - 66;
           Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
           | chr2:15640235-15641720 REVERSE
          Length = 248

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 20/233 (8%)

Query: 39  YSPKSTNASTLTTAFNTTKSRLVLRASASDFGSYIGESLGDVTIFTAAGEPVMIKDLWDQ 98
           YS KS   S          S +   +S +  G    +SL  V +    G  + I DLW  
Sbjct: 33  YSVKSHFRSVSLRRSAVVVSAITGASSGAGIGKGTADSLDTVKVLDLRGNEIPISDLWKD 92

Query: 99  NEGIAVVALLRHFGCPCCWELASVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFP 158
            +  AVVA  RHFGC  C + A+ L E K   +++GV L+ IG G+ ++A    ++  F 
Sbjct: 93  RK--AVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFK 150

Query: 159 MDCLYADPDRKAYDVLGLYYGFGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVK 218
            + +YADP+  +Y+ L    G   TF   A++ I   +     +  K+    D +++   
Sbjct: 151 GE-VYADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVER--- 206

Query: 219 NYTIEATPDDRSGVLQQGGMFVFK-GK-QLLYARKDEGTGDHAPLDDVFNICC 269
                       G  QQGG+ V   GK  + Y RKD+  GD  P++++   CC
Sbjct: 207 ------------GGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACC 247