Jatropha Genome Database

JcCB0103361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103361.10 - phase: 0 
         (468 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02260.1 | Symbols:  | transmembrane protein, putative | chr1...   526   e-149

>AT1G02260.1 | Symbols:  | transmembrane protein, putative |
           chr1:440757-442459 REVERSE
          Length = 502

 Score =  526 bits (1355), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/502 (54%), Positives = 337/502 (67%), Gaps = 36/502 (7%)

Query: 1   MAATVKMILGSFAFAIFWVLAVFPAIPILPIGRTAGSLLAAVLMVIFQVITPTEAYSSID 60
           MA  +K++LGS AFAIFW+LAVFP++P LPIGRTAGSL  A+LMVIFQVITP +AY++ID
Sbjct: 3   MAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAAID 62

Query: 61  ISILALLFGTMVVSVYLERADAFKYLGKLLSWKSLGAKDLIFRVCLVSAITSAFFTNDTS 120
           + IL LLFGTMVVS+YLERAD FKYLG LLSWKS G KDL+ RVCLVSA++SA FTNDTS
Sbjct: 63  LPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTNDTS 122

Query: 121 CIVLTQMVLKIARQRNLPPHPFLLXXXXXXXXXXXXTPIGNPQNLIIALNGDISFWPFLG 180
           C+VLT+ VLKIARQ+NLPPHPFLL            TPIGNPQNL+IA+   I FW FL 
Sbjct: 123 CVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEFLL 182

Query: 181 GIFPAAVVXXXXXXXXXXCMYWKQLSSQKXXXXXXXXXXXXXXXXY----HR-------- 228
           G+FPA +V           MYW+ LS  K                     HR        
Sbjct: 183 GVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPATFSP 242

Query: 229 LNCQEICLGLDMQS-------SPYVLENLAALSNGVLERSSAAS---------------K 266
           ++ ++  L +D          S    E ++  SN   E+ + A                +
Sbjct: 243 VSSEDSNLRMDAAETLRNRAGSAGESELISCNSNASREQHNDAESQGESNNTNNMFQTKR 302

Query: 267 WKALIWKSCVYLVTIGMLIALLMGVNISWTALTAALSLMVLDFKDAQPCLEKVSYSLLVF 326
           W+ ++WKS VY +T+GMLI+LLMG+N+SWTA+TAAL+L+VLDFKDA+P LEKVSYSLL+F
Sbjct: 303 WRRVLWKSSVYFITLGMLISLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIF 362

Query: 327 FCGLFMTITGFEKTGIPSYLWEFLEPYAHIDHASGITVLAXXXXXXXXXXXXVTTVLLLG 386
           FCG+F+T+ GF KTGIP+ LW+ +EPYA ID A GI VLA            V TVLLLG
Sbjct: 363 FCGMFITVDGFNKTGIPTALWDLMEPYAKIDQAKGIAVLAVVILVLSNVASNVPTVLLLG 422

Query: 387 GRVAASAASISPTYVKKAWLVLAWVSTASGNFTLVGSAANMIVCEQARNAPNFGCNLSFF 446
            RVAASA  +     KKAWL+LAWVST +GN TL+GSAAN+IVCEQAR A + G  L+F 
Sbjct: 423 ARVAASA--MGREEEKKAWLLLAWVSTVAGNLTLLGSAANLIVCEQARRAVSHGYTLTFT 480

Query: 447 GHLKFGLPSTILVTAIGLTLIH 468
            H KFGLPST++VTAIGL LI 
Sbjct: 481 KHFKFGLPSTLIVTAIGLFLIK 502