Jatropha Genome Database
- JcCB0102421.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0102421.20 + phase: 0 /pseudo
(247 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G42630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 164 6e-41
AT2G18940.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 2e-12
AT1G74850.1 | Symbols: PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY ... 69 3e-12
AT5G02860.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 69 4e-12
AT4G30825.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 66 2e-11
AT3G16890.1 | Symbols: PPR40 | PPR40 (PENTATRICOPEPTIDE (PPR) DO... 64 1e-10
AT3G53170.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 61 7e-10
AT4G14190.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 60 2e-09
AT2G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 2e-09
AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 3e-09
AT4G31850.1 | Symbols: PGR3 | PGR3 (PROTON GRADIENT REGULATION 3... 58 6e-09
AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745)... 57 1e-08
AT5G21222.1 | Symbols: | protein kinase family protein | chr5:7... 57 1e-08
AT1G51965.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 57 1e-08
AT4G39620.1 | Symbols: EMB2453 | EMB2453 (embryo defective 2453)... 56 2e-08
AT4G19440.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 2e-08
AT5G42310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 2e-08
AT1G12620.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 3e-08
AT3G06430.1 | Symbols: EMB2750 | EMB2750 (embryo defective 2750)... 55 3e-08
AT5G48730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 3e-08
AT1G79490.1 | Symbols: EMB2217 | EMB2217 (embryo defective 2217)... 55 4e-08
AT1G77360.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 4e-08
AT3G22470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 5e-08
AT1G09680.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 5e-08
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 8e-08
AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 8e-08
AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 1e-07
AT1G12700.1 | Symbols: | helicase domain-containing protein / p... 54 1e-07
AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 1e-07
AT1G13800.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 1e-07
AT1G74750.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 1e-07
AT1G12775.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 53 2e-07
AT1G52620.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 2e-07
AT5G46100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 53 2e-07
AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT4G26800.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 2e-07
AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT3G48810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT1G73710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT5G46580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT1G19520.1 | Symbols: NFD5 | NFD5 (NUCLEAR FUSION DEFECTIVE 5) ... 52 3e-07
AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 3e-07
AT3G23020.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 4e-07
AT2G41720.1 | Symbols: EMB2654 | EMB2654 (EMBRYO DEFECTIVE 2654)... 52 5e-07
AT1G06580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 6e-07
AT5G65820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 6e-07
AT1G05670.2 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 51 6e-07
AT1G05670.1 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transfer... 51 6e-07
AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 7e-07
AT3G18110.1 | Symbols: EMB1270 | EMB1270 (embryo defective 1270)... 51 7e-07
AT1G62720.1 | Symbols: | INVOLVED IN: biological_process unknow... 51 8e-07
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 50 9e-07
AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 50 1e-06
AT5G01110.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT5G50280.1 | Symbols: EMB1006 | EMB1006 (embryo defective 1006)... 50 2e-06
AT4G16390.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 50 2e-06
AT5G65560.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 2e-06
AT2G15630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT5G61370.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G20300.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G10910.1 | Symbols: | INVOLVED IN: biological_process unknow... 49 2e-06
AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 3e-06
AT1G64580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 3e-06
AT2G16880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 3e-06
AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 3e-06
AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 3e-06
AT2G32630.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 4e-06
AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 4e-06
AT5G11310.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 4e-06
AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknow... 49 4e-06
AT2G41720.2 | Symbols: EMB2654 | EMB2654 (EMBRYO DEFECTIVE 2654)... 48 4e-06
AT5G59900.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 5e-06
AT1G06710.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 5e-06
AT5G38730.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 5e-06
AT5G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 5e-06
AT3G62540.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 5e-06
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 6e-06
AT1G09820.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 6e-06
AT5G06400.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 6e-06
AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 7e-06
AT3G62470.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 9e-06
AT1G80880.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 47 1e-05
>AT3G42630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:14722314-14723635 FORWARD
Length = 415
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 123/184 (66%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
VD A LVQTL ++R+ +A E+ L+ KS +P+ TL A+M+C+AENG + +A++IW+E
Sbjct: 48 VDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIWDE 107
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
I+++ F P + +VS+LISAY + G F+EV KI ++ + L SLAISCFG GQ
Sbjct: 108 IINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFGKNGQ 167
Query: 175 IQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDREGIRA 234
++LME ++EM S+G ++ T N ++YYS GSL +ME A R+K+ +I+ E IRA
Sbjct: 168 LELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEEEIRA 227
Query: 235 MAFA 238
+ A
Sbjct: 228 VVLA 231
>AT2G18940.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:8203873-8206341 REVERSE
Length = 822
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 82/163 (50%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ LGKK ++ ++L +MKS G P+ +T + M+ G+ ++ E+ S
Sbjct: 426 AVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSC 485
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
FEP + LISAYG+ G + K+ +++ + F++ Y+ ++ G +
Sbjct: 486 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLK 221
EN + +M S+GF + + ++ Y+ G+ +E NR+K
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%)
Query: 81 KSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQF 140
K GY P ++M+ + N + QA+ I E I P + + L+ Y + G+
Sbjct: 623 KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGEC 682
Query: 141 NEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTF 200
+ ++IL L S +Y+ I F G +Q L EM RG T NTF
Sbjct: 683 WKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTF 742
Query: 201 IKYYSIHGSLTEMES 215
+ Y+ G E+E
Sbjct: 743 VSGYTAMGMFAEIED 757
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 57/118 (48%)
Query: 57 CASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEIL 116
C++++ ++ + A E E+KS GY P T +A++ + + G+ +A S+ +E+
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343
Query: 117 STSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
S +EL++AY ++G E +++ ++ Y+ I +G G+
Sbjct: 344 ENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGK 401
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%)
Query: 76 LLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYG 135
+L EM+S+G T S ++ A GLL +A+ + E+ S +EP + L+ +G
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 136 KSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFA 195
K+G + E +L ++ ++ + Y+ ++ + G + ++ M +G +
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAI 387
Query: 196 TGNTFIKYYSIHGSLTE 212
T T I Y G E
Sbjct: 388 TYTTVIDAYGKAGKEDE 404
>AT1G74850.1 | Symbols: PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY
ACTIVE2) | chr1:28119237-28122314 REVERSE
Length = 862
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 72/137 (52%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
LV+T GK R +LL EM S G +P ++ + ++ YA++G + +A ++ ++ +
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG 347
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
P+ S L++ +G+SG++++V+++ ++ SN Y++ I FG GG + +
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407
Query: 180 NTLKEMVSRGFSVDFAT 196
+MV D T
Sbjct: 408 TLFHDMVEENIEPDMET 424
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 75 ELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAY 134
+L LEMKS P +T + ++ + E G + +++ +++ + EP ++ +I A
Sbjct: 373 QLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432
Query: 135 GKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTL---KEMVSRGFS 191
GK G + +KIL ++ ++ +AY+ I F GQ L E L M G +
Sbjct: 433 GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF---GQAALYEEALVAFNTMHEVGSN 489
Query: 192 VDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
T ++ + ++ G + E E+ +RL S
Sbjct: 490 PSIETFHSLLYSFARGGLVKESEAILSRLVDS 521
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A+ + M G VP +T S ++ + + L + + E+ S P I + L+
Sbjct: 266 AEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLE 325
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
AY KSG E + Q+ + + YS+ ++ FG G+ + EM S
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP 385
Query: 193 DFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDREGIRAMAFA 238
D AT N I+ + G E+ + + + D E + FA
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFA 431
>AT5G02860.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:654102-656561 FORWARD
Length = 819
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
SL+ + M A EL +M +G P T + ++ + G + A SI+EE+ +
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P+I + I YG G+F E+ KI D+++ S ++ ++ FG G +
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRL 220
KEM GF + T NT I YS GS + + R+
Sbjct: 474 SGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A ++ EMK+ G+ T +A++ Y ++ +A + E++ F PSI + LIS
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
AY + G +E ++ +Q++ Y+ +S F G+++ + +EM + G
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417
Query: 193 DFATGNTFIKYYSIHGSLTEM 213
+ T N FIK Y G TEM
Sbjct: 418 NICTFNAFIKMYGNRGKFTEM 438
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%)
Query: 79 EMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSG 138
EM++ G P+ T +A + Y G + I++EI P I + L++ +G++G
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468
Query: 139 QFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGN 198
+EV + ++ + F E ++ IS + G + + M+ G + D +T N
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528
Query: 199 TFIKYYSIHGSLTEMESACNRLKRSR 224
T + + G + E ++ R
Sbjct: 529 TVLAALARGGMWEQSEKVLAEMEDGR 554
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
V +L+ G+ M + EMK G+VP T + ++ Y+ G QA +++
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRR 514
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
+L P + + +++A + G + + +K+L ++ Y + + NG +
Sbjct: 515 MLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKE 574
Query: 175 IQLMENTLKEMVS 187
I LM + +E+ S
Sbjct: 575 IGLMHSLAEEVYS 587
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 69/146 (47%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
S+V G+++M A+ +L MK +G+ PS +T +++M ++ + +++ I EIL+
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P I + +I AY ++ + + +I ++ S Y+ I + +
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEA 753
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYY 204
++ M+ G + T N+ + Y
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
SL+ + L L E+ S P L +++ ++ LLP+A+ + E+
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
F P I ++ ++S YG+ + +LD + F+ Y+ +
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYY 204
E L+E++++G D + NT I Y
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAY 709
>AT4G30825.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:15009605-15012319 FORWARD
Length = 904
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ GK ++ +EL L K G V S + ++ Y +N S + +
Sbjct: 705 LLDVYGKAKLFKKVNELFLLAKRHGVVDVIS-YNTIIAAYGKNKDYTNMSSAIKNMQFDG 763
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
F S++ + L+ AYGK Q + + IL ++ S H Y++ I+ +G G I +
Sbjct: 764 FSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVA 823
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLI 227
+ LKE+ G D + NT IK Y I G + E + R R++I
Sbjct: 824 DVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEM-RGRNII 870
>AT3G16890.1 | Symbols: PPR40 | PPR40 (PENTATRICOPEPTIDE (PPR)
DOMAIN PROTEIN 40) | chr3:5768401-5770380 REVERSE
Length = 659
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ L M + L ++ +GY+P +ST +A M C + L + I++ +S
Sbjct: 325 AVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSR 384
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P L+ A + +F+E + L Q+ S +Y+ I C +I+
Sbjct: 385 GVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENA 444
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRL 220
L EM RG S + T NTF+ YS+ G + ++ +L
Sbjct: 445 AMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKL 486
>AT3G53170.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: glutamine biosynthetic process; LOCATED IN:
nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT5G48730.1); Has
17188 Blast hits to 5538 proteins in 167 species: Archae
- 1; Bacteria - 16; Metazoa - 307; Fungi - 211; Plants -
16025; Viruses - 0; Other Eukaryotes - 628 (source: NCBI
BLink). | chr3:19704729-19706417 REVERSE
Length = 497
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L + LG + A L M S+G P+ ++++ Y ++ LL +A S E + S S
Sbjct: 150 LFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVS 209
Query: 120 -FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P + + LIS K G+F+ VK I+ ++SY Y+ I +G G + M
Sbjct: 210 DCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEM 269
Query: 179 ENTLKEMVSRGFSV-DFATGNTFIKYYSIHGSLTEMESACNRLK 221
E+ L +M+ G S+ D T N+ I Y ++ +MES +R +
Sbjct: 270 ESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQ 313
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 83/171 (48%), Gaps = 1/171 (0%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQG-YVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
+++ GK M + +L +M G +P TL++++ Y + + +S +
Sbjct: 255 TIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQL 314
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
+P I + LI ++GK+G + ++ ++D + FS Y++ I FG G+I+
Sbjct: 315 MGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLID 228
M++ ++M +G + T + + YS G + +++S ++ S ++D
Sbjct: 375 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLD 425
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 67/134 (50%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
+++T GK D++ +MK QG P++ T +++ Y++ GL+ + S+ +I+++
Sbjct: 362 VIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 421
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
+ +I+AYG++G +K++ Q+ ++ I + G ++
Sbjct: 422 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ 481
Query: 180 NTLKEMVSRGFSVD 193
K+M+S G ++D
Sbjct: 482 ELEKQMISSGENLD 495
>AT4G14190.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885);
BEST Arabidopsis thaliana protein match is:
pentatricopeptide (PPR) repeat-containing protein
(TAIR:AT3G42630.1); Has 7409 Blast hits to 2639 proteins
in 94 species: Archae - 1; Bacteria - 0; Metazoa - 60;
Fungi - 16; Plants - 7130; Viruses - 0; Other Eukaryotes
- 202 (source: NCBI BLink). | chr4:8183594-8185180
REVERSE
Length = 501
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%)
Query: 87 PSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKI 146
PS ++++ YA++G +A + P + LI AYGK ++E+
Sbjct: 165 PSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLC 224
Query: 147 LDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSI 206
L ++ H Y+L I F GG ++ ME + ++SR +++ +T + ++ Y+
Sbjct: 225 LKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAE 284
Query: 207 HGSLTEMESACNRLKRSRHLIDREGIRAMA 236
G + +ME CN++ R +D +R +A
Sbjct: 285 FGLIEKMEETCNKIIRFGISLDEGLVRKLA 314
>AT2G35130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:14807589-14810164 REVERSE
Length = 591
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 74/146 (50%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
+V G+ + A+ + EMK G P+ + ++ Y++ + + ++I +E+
Sbjct: 375 MVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENG 434
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
EP +++ +++ YG+ GQF +++KIL ++ ++ Y++ I+ +G G ++ +E
Sbjct: 435 VEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIE 494
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYS 205
E+ + F D T + I YS
Sbjct: 495 ELFVELKEKNFRPDVVTWTSRIGAYS 520
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 12/194 (6%)
Query: 40 ALARKGRSVYGKEIFVDCA------------SLVQTLGKKRMTHLADELLLEMKSQGYVP 87
A AR+G +EIF +L+++ + + A E+ M+ G P
Sbjct: 308 AFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP 367
Query: 88 SNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKIL 147
++ + M+ Y GL A++++EE+ P+++ L+SAY K+ + + I+
Sbjct: 368 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 427
Query: 148 DQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIH 207
++S + + ++ +G GQ ME L EM + + D +T N I Y
Sbjct: 428 KEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKA 487
Query: 208 GSLTEMESACNRLK 221
G L +E LK
Sbjct: 488 GFLERIEELFVELK 501
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/190 (18%), Positives = 78/190 (41%), Gaps = 35/190 (18%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ GK ++++ +L EM+S P+ T +A++ +A GL +A+ I+E++
Sbjct: 270 MINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 329
Query: 120 FEPSIQIVSEL-----------------------------------ISAYGKSGQFNEVK 144
EP + + + L + AYG++G ++ +
Sbjct: 330 LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 389
Query: 145 KILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYY 204
+ +++ + +++ L +S + + E +KEM G D N+ + Y
Sbjct: 390 AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLY 449
Query: 205 SIHGSLTEME 214
G T+ME
Sbjct: 450 GRLGQFTKME 459
>AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5368034-5369641 FORWARD
Length = 535
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 19 SVKTKRTRFRVFF-SQRKPTNRALARKGRSVYG--KEIFVDCASLVQTLGKKRMTHLADE 75
SV++ T V +QR A+ + + +G IF C LV+ L KK A +
Sbjct: 154 SVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFT-CNLLVKALCKKNDIESAYK 212
Query: 76 LLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYG 135
+L E+ S G VP+ T + ++ Y G + A+ + EE+L + P + L+ Y
Sbjct: 213 VLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYC 272
Query: 136 KSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVD 193
K G+F+E ++D + + Y + I + N EM+ R F D
Sbjct: 273 KLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPD 330
>AT4G31850.1 | Symbols: PGR3 | PGR3 (PROTON GRADIENT REGULATION 3) |
chr4:15403020-15406358 FORWARD
Length = 1112
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
V C + + +L K A ++ +K G VP + T + MM CY++ G + +A + E
Sbjct: 469 VACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 528
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
++ EP + +V+ LI+ K+ + +E K+ ++ Y+ ++ G G+
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588
Query: 175 IQLMENTLKEMVSRGFSVDFATGNTF 200
IQ + MV +G + T NT
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTL 614
>AT5G39710.1 | Symbols: EMB2745 | EMB2745 (EMBRYO DEFECTIVE 2745) |
chr5:15895729-15897972 FORWARD
Length = 747
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%)
Query: 76 LLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYG 135
+L EM +GY T + ++ Y + G QA + E+L PS+ + LI +
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356
Query: 136 KSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFA 195
K+G N + LDQ+ Y+ + F G + L+EM GFS
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 196 TGNTFIKYYSIHGSLTE 212
T N I + + G + +
Sbjct: 417 TYNALINGHCVTGKMED 433
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
SL+ ++ K + A E L +M+ +G P+ T + ++ +++ G + +A + E+
Sbjct: 350 SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
F PS+ + LI+ + +G+ + +L+ + S +YS +S F +
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
+EMV +G D T ++ I+
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQ 493
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMM--ICYAENGLLPQAQSIWEEI 115
A L T+ KR A+ + EM P+ T + ++ C+A N + A ++++++
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN--IDVALTLFDKM 231
Query: 116 LSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQI 175
+ P++ + LI Y K + ++ K+L ++ +Y++ I+ G++
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291
Query: 176 QLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSL 210
+ + L EM RG+S+D T NT IK Y G+
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326
>AT5G21222.1 | Symbols: | protein kinase family protein |
chr5:7209422-7213700 FORWARD
Length = 831
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Query: 51 KEIFVDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQS 110
K + +LV L +++ H L+ +++ G P +A++ +E+G L QA
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410
Query: 111 IWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHE-AYSLAISCF 169
I+E++ + +P+ + LI YGK G+ E ++LD + ++ ++ + +
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470
Query: 170 GNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMES 215
N +I+ N + +M S G D T NT K Y+ GS E
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516
>AT1G51965.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:19312078-19314145 REVERSE
Length = 650
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 2/165 (1%)
Query: 59 SLVQTLGK-KRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
++ LGK K+++H+ D L +MK G P T + ++ + G + +A +I+EE+
Sbjct: 447 TVFSALGKLKQISHIHD-LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELER 505
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
+ +P I + LI+ GK+G +E ++ + YS + CFG ++++
Sbjct: 506 SDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEM 565
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKR 222
+ +EM+ +G + T N + +G E +++K+
Sbjct: 566 AYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQ 610
>AT4G39620.1 | Symbols: EMB2453 | EMB2453 (embryo defective 2453) |
chr4:18395294-18397578 FORWARD
Length = 563
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 17/179 (9%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAEN-----------GLLP 106
+ L+ +GKK T +A L EMK+ G P S +A++ + G L
Sbjct: 137 SKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLD 196
Query: 107 QAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAI 166
+ + I +P++ + L+ A+ +SG+ ++V + L S S ++ +
Sbjct: 197 KMKGI------ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250
Query: 167 SCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRH 225
+G G I+ ME L M S D T N I Y +ME L RS+
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKE 309
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%)
Query: 87 PSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKI 146
P T + +M Y +NG++ + +++ + S +P I + LI +YGK +F ++++
Sbjct: 241 PDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQT 300
Query: 147 LDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSI 206
L S ++ I +G I E K+M + F T I Y
Sbjct: 301 FKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGY 360
Query: 207 HGSLTEMESACNRLKRSRHLIDREGIRAM 235
GS++ + S ++ + AM
Sbjct: 361 CGSVSRAREIFEEVGESDRVLKASTLNAM 389
>AT4G19440.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:10602006-10604483 REVERSE
Length = 825
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%)
Query: 72 LADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELI 131
+A EL +MK +G P+++T ++++ + + +A+ ++EE+ EP++ + LI
Sbjct: 663 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 722
Query: 132 SAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFS 191
YGK GQ +V+ +L ++ N Y++ I + G + L EM +G
Sbjct: 723 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 782
Query: 192 VDFATGNTFIKYYSIHGSLTE 212
D T FI Y G + E
Sbjct: 783 PDSITYKEFIYGYLKQGGVLE 803
>AT5G42310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:16915860-16918238 FORWARD
Length = 709
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A+ ++ EM+ +G P T S ++ Y G A+ + +E+ + +P+ + S L++
Sbjct: 358 AESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA 417
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
+ G++ + ++L ++ + Y++ I FG + T M+S G
Sbjct: 418 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
Query: 193 DFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDREGIRAM 235
D T NT I + HG RH++ E AM
Sbjct: 478 DRVTWNTLIDCHCKHG---------------RHIVAEEMFEAM 505
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
V +LV GK + A E L EMKS G PS++ +A++ YA+ GL QA + +
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
+ S +PS+ ++ LI+A+G+ + E +L + + Y+ + +
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Query: 175 IQLMENTLKEMVSRGFSVD 193
Q + +EM+ G D
Sbjct: 670 FQKVPVVYEEMIMSGCKPD 688
>AT1G12620.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:4294883-4296748 REVERSE
Length = 621
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
+++ + K T LA ELL +M+ + S ++ ++G L A +++ E+
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
F+ I I + LI + +G++++ K+L + + A+S I CF G+++
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLID 228
E KEM+ RG S D T + I + N+L ++ H++D
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKE----------NQLDKANHMLD 376
>AT3G06430.1 | Symbols: EMB2750 | EMB2750 (embryo defective 2750) |
chr3:1956658-1958240 REVERSE
Length = 486
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 85 YVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVK 144
Y P T +++ ++G +AQ +++E+L EP++++ + L++AY +S ++
Sbjct: 120 YQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAF 179
Query: 145 KILDQL-SYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKY 203
ILD++ S+ YS + + Q L+++ KEM R + + T N +
Sbjct: 180 SILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSG 239
Query: 204 YSIHGSLTEME 214
Y G +ME
Sbjct: 240 YGRVGRFDQME 250
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%)
Query: 87 PSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKI 146
P T++ ++ + G + +S +E+ + EP + + LI +YGK ++++ +
Sbjct: 264 PDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSV 323
Query: 147 LDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSI 206
++ + F Y+ I F + G + ME T +M S G D T I Y+
Sbjct: 324 MEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYAN 383
Query: 207 HG 208
G
Sbjct: 384 AG 385
>AT5G48730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:19763152-19765136 FORWARD
Length = 495
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 56/101 (55%)
Query: 87 PSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKI 146
P + T+++ + + NG + ++ +E+ S+ EP+I+ + L+ +YGKSG + ++ +
Sbjct: 277 PDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAV 336
Query: 147 LDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVS 187
++ + ++S Y++ I FG G ++ ME + M S
Sbjct: 337 MEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQS 377
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST- 118
L+ LGK + A EL EM ++G V ++ +A++ Y+ +G A ++ E + S+
Sbjct: 156 LIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSH 215
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSY----SNFSSLHEAYSLAIS------- 167
+ +P + S LI ++ + F++V+ +L + N + E S I
Sbjct: 216 NCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEMESTLIQMLGEDDC 275
Query: 168 ------------CFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMES 215
FG GQI++MEN ++ S G + T N + Y G+ +M +
Sbjct: 276 KPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSA 335
Query: 216 ACNRLKR 222
+++
Sbjct: 336 VMEYMQK 342
>AT1G79490.1 | Symbols: EMB2217 | EMB2217 (embryo defective 2217) |
chr1:29900617-29903127 FORWARD
Length = 836
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
+SLV ++GK + ++ +EM+ G+ PS + +++ YA+ G L A +W+E+
Sbjct: 352 SSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKK 411
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
+ F P+ + + +I ++ KSG+ + + + F YS + GQ+
Sbjct: 412 SGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDS 471
Query: 178 MENTLKEMVSRGF 190
M + G
Sbjct: 472 AMKIYNSMTNAGL 484
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ +L K A +L +MK + PS S S+++ + G L + ++ E+
Sbjct: 319 IIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFG 378
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
PS + LI +Y K+G+ + ++ D++ S F Y++ I G++++
Sbjct: 379 HRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAM 438
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESA 216
K+M GF T +T+ +H +++SA
Sbjct: 439 TVFKDMEKAGF---LPTPSTYSCLLEMHAGSGQVDSA 472
>AT1G77360.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:29071983-29073428 REVERSE
Length = 481
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ L K + A E+ M+ + + P + T S ++ + + LP+A+ ++ E++
Sbjct: 173 LLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAG 231
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
P I S ++ K+G+ +E I+ + S YS+ + +G +++
Sbjct: 232 CHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAV 291
Query: 180 NTLKEMVSRGFSVDFATGNTFI-------KYYSIHGSLTEMES--------ACNRLKRSR 224
+T EM G D A N+ I + +++ L EM+S +CN + R
Sbjct: 292 DTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNII--LR 349
Query: 225 HLIDREGIRAMAFAL 239
HLI+R G + AF +
Sbjct: 350 HLIER-GEKDEAFDV 363
>AT3G22470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:7966066-7967925 REVERSE
Length = 619
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 3/186 (1%)
Query: 42 ARKGRSVYGKEIFVDC---ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMIC 98
A+ R + G+ I D ++L+ K+ A EL EM ++G P T ++++
Sbjct: 300 AKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359
Query: 99 YAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSL 158
+ + L +A +++ ++S EP I S LI++Y K+ + ++ ++ ++S
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 159 HEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACN 218
Y+ + F G++ + +EMVSRG T + +G L +
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 479
Query: 219 RLKRSR 224
++++SR
Sbjct: 480 KMQKSR 485
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 74/164 (45%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ + K + L E+ S+G +P+ T + +++ + ++G L A+ +++E++S
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
PS+ L+ +G+ N+ +I +++ S + Y++ I N ++
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
+ + +G D T N I GSL+E + ++K
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554
>AT1G09680.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3134107-3135930 REVERSE
Length = 607
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 73/166 (43%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
++L+ L K+ A L EM +G +P++ + ++ ++ NG + + ++++LS
Sbjct: 314 SALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLS 373
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
+P I + + L++ + K+G + I+D + Y+ I F GG ++
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVET 433
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
KEM G +D + + G + + E A + R+
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA 479
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE
Length = 634
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ +L K R A L EM+++G P+ T S+++ C G A + +++
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 324
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ + LI A+ K G+F E +K+ D + + Y+ ++ F ++
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
+ + MVS+ D T NT IK
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIK 408
>AT1G63330.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23489628-23491519 FORWARD
Length = 558
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ +L K R A L EM+++G P+ T S+++ C G A + +++
Sbjct: 189 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 248
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ + LI A+ K G+F E +K+ D + + Y+ I+ F ++
Sbjct: 249 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 308
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
+ + MVS+ D T NT IK
Sbjct: 309 KQMFEFMVSKDCFPDLDTYNTLIK 332
>AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23388884-23390728 REVERSE
Length = 614
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
++++ +L K R A L EM ++G P T S+++ C G A + ++L
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
P++ + LI A+ K G+ E +K+ D++ + Y+ I+ F ++
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363
Query: 178 MENTLKEMVSRGFSVDFATGNTFI 201
+ MVS+ D T NT I
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLI 387
>AT1G12700.1 | Symbols: | helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein |
chr1:4322913-4326197 REVERSE
Length = 828
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 79/166 (47%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
S+V + + T LA +LL +M+ + T S ++ +G + A S+++E+ +
Sbjct: 188 SIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 247
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+ S+ + L+ K+G++N+ +L + +++ + F G++Q
Sbjct: 248 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 307
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSR 224
KEM++RG S + T NT + Y + L+E + + + R++
Sbjct: 308 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A+EL EM ++G P+ T + +M Y L +A ++ + ++ P I + LI
Sbjct: 307 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 366
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
Y + ++ K+ +S + YS+ + F G+I+L E +EMVS G
Sbjct: 367 GYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLP 426
Query: 193 DFATGNTFIKYYSIHGSLTEMESACNRLKRSR 224
D T + +G L + L++S+
Sbjct: 427 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
LVQ + LA+EL EM S G +P T ++ +NG L +A I+E++ +
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
+ I + + +I K G+ + + L Y++ IS G +
Sbjct: 459 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 518
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLT 211
L++M G + + T NT I+ + G LT
Sbjct: 519 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 550
>AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23419399-23421288 FORWARD
Length = 629
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ +L K R +A +L EM+++G P+ T ++++ C G A + +L
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ + LI A+ K G+ E +K+ +++ + Y+L I+ F ++
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382
Query: 179 ENTLKEMVSRGFSVDFATGNTFI 201
+ K MVS+ + T NT I
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLI 405
>AT1G13800.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:4731056-4733707 REVERSE
Length = 883
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A+ ++L+M+ G P SA++ + +N +P+A ++ ++L + IVS ++
Sbjct: 310 AESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQ 369
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
Y + G F+E + + +N S Y++A G G+++ +EM +G +
Sbjct: 370 CYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAP 429
Query: 193 DFATGNTFIKYYSIHGSLTE 212
D T I + G ++
Sbjct: 430 DVINYTTLIGGCCLQGKCSD 449
>AT1G74750.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28086800-28089367 FORWARD
Length = 855
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
++V LG+ + ++LL EM G P+ T + ++ Y L +A +++ ++
Sbjct: 364 TMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEA 423
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
EP LI + K+G + + ++ + S YS+ I+C G G +
Sbjct: 424 GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESA 216
EMV +G + + T N I ++H E+A
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMI---ALHAKARNYETA 518
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ LGK A L EM QG P+ T + M+ +A+ A ++ ++ +
Sbjct: 470 IINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAG 529
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
F+P S ++ G G E + + ++ N+ Y L + +G G +
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAW 589
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYY 204
+ M+ G + T N+ + +
Sbjct: 590 QWYQAMLQAGLRPNVPTCNSLLSTF 614
>AT1G12775.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
7 plant structures; EXPRESSED DURING: F mature embryo
stage, petal differentiation and expansion stage, D
bilateral stage, E expanded cotyledon stage; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269
proteins in 197 species: Archae - 2; Bacteria - 23;
Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0;
Other Eukaryotes - 1551 (source: NCBI BLink). |
chr1:4353906-4355840 FORWARD
Length = 644
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 81/169 (47%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ + K+ AD+LL EM +G P+ T ++++ + + L +A + + ++S
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
+P I + LI+ Y K+ + ++ ++ ++S + Y+ + F G++++ +
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLID 228
+EMVSR D + + +G L + ++++S+ +D
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%)
Query: 75 ELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAY 134
EL+ M G+ P+ TL+ ++ NG + A + + ++ T F+P+ +++
Sbjct: 179 ELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM 238
Query: 135 GKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDF 194
KSGQ ++L ++ N YS+ I G + N EM +GF D
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 298
Query: 195 ATGNTFI 201
T NT I
Sbjct: 299 ITYNTLI 305
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ + K T LA ELL +M+ + S ++ ++G L A +++ E+
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
F+ I + LI + +G++++ K+L + S +S+ I F G+++ +
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTE 212
LKEM+ RG + + T N+ I + L E
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
>AT1G52620.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:19603828-19606287 FORWARD
Length = 819
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
A L+Q K + +A +LLL+M +G P T ++ +G + A ++ +++
Sbjct: 384 APLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID 443
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
P I + L+S K+G+F K + ++ N Y+ I F G
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDE 503
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDR 229
V +G VD N IK + G L E + NR+ + D+
Sbjct: 504 ARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDK 555
>AT5G46100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:18694316-18695734 REVERSE
Length = 472
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 40 ALARKGRSVYGKEIFV-----DCA-------SLVQTLGKKRMTHLADELLLEMKSQGYVP 87
L R GR K++F DCA SL+ L + A L EMKS+G P
Sbjct: 201 GLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEP 260
Query: 88 SNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKIL 147
+ T S++M ++G QA ++E +++ P++ + LI+ K + E ++L
Sbjct: 261 NVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELL 320
Query: 148 DQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIK 202
D+++ Y IS F + + N L EM+ G + + T N +K
Sbjct: 321 DRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVK 375
>AT1G62670.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23204773-23206665 REVERSE
Length = 630
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Query: 65 GKKRMTHLADELLL--EMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEP 122
G + H+ D L L EM+++G P+ T S+++ C G A + +++ P
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324
Query: 123 SIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTL 182
+ S LI A+ K G+ E +K+ D++ + YS I+ F ++ +
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 183 KEMVSRGFSVDFATGNTFIKYYSIHGSLTE 212
+ MVS+ D T NT IK + + + E
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+Q L + +A E+ EM S G P+ T + ++ +NG L +A ++E + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
EP+I + +I K+G+ + + LS AY+ IS F G + +
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 180 NTLKEMVSRGFSVDFATGNTFIK 202
KEM G + NT I+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIR 579
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 35/187 (18%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A LL +M + P T SA++ + + G L +A+ +++E++ S +PSI S LI+
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 369
Query: 133 AYGKSGQFNEVKKIL----------DQLSYSN-------FSSLHEA-------------- 161
+ + +E K++ D ++Y+ + + E
Sbjct: 370 GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 429
Query: 162 ----YSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESAC 217
Y++ I G + + KEMVS G + T NT + +G L +
Sbjct: 430 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489
Query: 218 NRLKRSR 224
L+RS+
Sbjct: 490 EYLQRSK 496
>AT4G26800.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:13490251-13491458 FORWARD
Length = 369
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
+SL+ L K A+ L EM S+ P+ T SA++ YA+ G L + S+++ ++
Sbjct: 87 SSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQ 146
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
S +P++ S LI + +E K+LD + + YS + F ++
Sbjct: 147 MSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDD 206
Query: 178 MENTLKEMVSRGFSVDFATGNTFIKYY 204
L +M RG + + + NT IK Y
Sbjct: 207 GIKLLDDMPQRGVAANTVSCNTLIKGY 233
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 51 KEIFVDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQS 110
+++ VD L+ TL K R+ A E+L MK +G P+ T S+++ ++G L A+
Sbjct: 46 RDVVVDTI-LIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAER 104
Query: 111 IWEEILSTSFEPSIQIVSELISAYGKSGQFNEVK---KILDQLSYS----NFSSLHEAYS 163
E+ S P++ S LI AY K G+ ++V K++ Q+S +SSL Y
Sbjct: 105 RLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSL--IYG 162
Query: 164 LAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTF 200
L C N ++ L M+S+G + + T +T
Sbjct: 163 L---CMHN--RVDEAIKMLDLMISKGCTPNVVTYSTL 194
>AT1G18900.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 60/145 (41%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ LGK A +L EM QG P+ T + MM +A+ A ++ ++ +
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
FEP S ++ G G E + + ++ N+ Y L + +G G ++
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYY 204
+ M+ G + T N+ + +
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTF 619
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
++V LG+ + ++LL EM G P+ T + ++ Y L +A +++ ++
Sbjct: 369 TMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA 428
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P LI + K+G + + ++ S YS+ I+C G G +
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYS 205
EMV +G + + T N + ++
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHA 515
>AT1G18900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:6529778-6532360 FORWARD
Length = 860
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 60/145 (41%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
++ LGK A +L EM QG P+ T + MM +A+ A ++ ++ +
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
FEP S ++ G G E + + ++ N+ Y L + +G G ++
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYY 204
+ M+ G + T N+ + +
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTF 619
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
++V LG+ + ++LL EM G P+ T + ++ Y L +A +++ ++
Sbjct: 369 TMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA 428
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P LI + K+G + + ++ S YS+ I+C G G +
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYS 205
EMV +G + + T N + ++
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHA 515
>AT3G48810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:18097048-18099027 FORWARD
Length = 659
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L++ L K A +LL+EM ++G P + + ++ E GL+ + + L+
Sbjct: 187 LLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRE-----LAER 241
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
FEP + + + LI+ K + +++ ++ S +YS I+ N GQI+L
Sbjct: 242 FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAF 301
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKR 222
+ L +M+ RG + T ++ +K + G+ + N++ R
Sbjct: 302 SFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIR 344
>AT1G73710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:27721190-27724165 FORWARD
Length = 991
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
SL Q L + A +L EM G P T +AM+ Y GLL A ++E + T
Sbjct: 555 SLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKT 614
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P+ + LI+ + +SG E + + S H + I + G ++
Sbjct: 615 GVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEA 674
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLK 221
+M D A N+ + + G ++E ES N L+
Sbjct: 675 RRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNALR 717
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
+++ GK ++ A L MK+QG P T +++ A L+ +AQ I E+L +
Sbjct: 521 MIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSG 580
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
+P + + +I++Y + G ++ + + + + Y I+ F G ++
Sbjct: 581 CKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAI 640
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
+ M G + + IK YS G L E +++K S
Sbjct: 641 QYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDS 684
>AT5G46580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:18897510-18899645 REVERSE
Length = 711
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 62/132 (46%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A E M G +P T SA++ Y+++G + + S++E ++T ++P S L
Sbjct: 240 AIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGK 299
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
+G++G ++ ++ +L ++ + Y+ + G G+ L + EM+ G +
Sbjct: 300 MFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTP 359
Query: 193 DFATGNTFIKYY 204
+ T +K Y
Sbjct: 360 NEKTLTALVKIY 371
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 3/160 (1%)
Query: 44 KGRSVYGKE-IFVDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAEN 102
K +S++ E IF + +++L R L +E+ LEM G N T S ++ C
Sbjct: 177 KSKSLFPMETIFYNVT--MKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRC 234
Query: 103 GLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAY 162
L +A +E + T P S ++ Y KSG+ EV + ++ + + A+
Sbjct: 235 NLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAF 294
Query: 163 SLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIK 202
S+ FG G + L+EM S + NT ++
Sbjct: 295 SVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLE 334
>AT1G19520.1 | Symbols: NFD5 | NFD5 (NUCLEAR FUSION DEFECTIVE 5) |
chr1:6760032-6762581 FORWARD
Length = 725
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 4/162 (2%)
Query: 53 IFVD---CASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQ 109
IF D +LV K A E +KS G P AM++ Y G +
Sbjct: 415 IFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGE 474
Query: 110 SIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLH-EAYSLAISC 168
+ +E+ + + S ++ L+ AY + G N I + Y++ L EAYSL +
Sbjct: 475 RLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEA 534
Query: 169 FGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSL 210
+G GQ+ ++ EM G D ++ Y SL
Sbjct: 535 YGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSL 576
>AT4G30700.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:14962617-14964995 REVERSE
Length = 792
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 69 MTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVS 128
+T A L EM+ + P+ T++ ++ A+ G L + + + + ST FE SI + +
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459
Query: 129 ELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSR 188
LI Y K G E +++ D ++ N ++ IS +G GQ Q N EM++
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKN----EVTWNTMISGYGLHGQGQEALNIFYEMLNS 515
Query: 189 GFS 191
G +
Sbjct: 516 GIT 518
>AT3G23020.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:8177215-8179743 REVERSE
Length = 842
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
+++ LGK L EM +G P NST ++ Y++ GL A ++
Sbjct: 193 MLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIG 252
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYS-NFSSLH-----EAYSLAISCFGNGG 173
+P ++ Y K+ +F + ++ + S N + H Y+ I +G G
Sbjct: 253 MQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSG 312
Query: 174 QIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLK 221
QI+ T K M+ G T NT I Y +G L E+ S +K
Sbjct: 313 QIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK 360
>AT2G41720.1 | Symbols: EMB2654 | EMB2654 (EMBRYO DEFECTIVE 2654) |
chr2:17403744-17407127 REVERSE
Length = 822
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQ-GYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
L++ L ++ L + MK Q Y N + M+ +A + + QA+ ++ E+
Sbjct: 113 LIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKW 172
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
S +P + LI+A+G++GQ+ ++D + + + Y+ I+ G+ G +
Sbjct: 173 SCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREA 232
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYY 204
K+M G D T N + Y
Sbjct: 233 LEVCKKMTDNGVGPDLVTHNIVLSAY 258
>AT1G06580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2014440-2015942 REVERSE
Length = 500
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ +L +K + A ++L MK G P T ++++ +G + I +++
Sbjct: 189 TIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRM 248
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P + S LI YGK GQ E KK +++ + + Y+ I+ G +
Sbjct: 249 GISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEA 308
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYY 204
+ L +VS+GF + T NT I Y
Sbjct: 309 KKVLNVLVSKGFFPNAVTYNTLINGY 334
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%)
Query: 76 LLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYG 135
+L +M G P T SA++ Y + G L +A+ + E++ S P+I + LI+
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC 300
Query: 136 KSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFA 195
G +E KK+L+ L F Y+ I+ + ++ L M G D
Sbjct: 301 IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTF 360
Query: 196 TGNTFIKYYSIHGSLTEMESACNRL 220
T NT + Y G + E R+
Sbjct: 361 TYNTLYQGYCQAGKFSAAEKVLGRM 385
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%)
Query: 72 LADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELI 131
LA L +M G+ PS T +++ + +A S+ ++I+ +EP++ I + +I
Sbjct: 132 LALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTII 191
Query: 132 SAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFS 191
+ + GQ N +L + Y+ I+ + G + L +M+ G S
Sbjct: 192 DSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGIS 251
Query: 192 VDFATGNTFIKYYSIHGSLTEMESACNRL 220
D T + I Y G L E + N +
Sbjct: 252 PDVITFSALIDVYGKEGQLLEAKKQYNEM 280
>AT5G65820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26339876-26341789 REVERSE
Length = 637
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 52 EIFVDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSI 111
E+FV LVQ M A E+L EM G+ P ++ ++G + A +
Sbjct: 184 ELFV---VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240
Query: 112 WEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGN 171
+E+ + F +++ + L+ + + G+ E K +L Q++ + F Y+ +S + N
Sbjct: 241 FED-MRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYAN 299
Query: 172 GGQIQLMENTLKEMVSRGF 190
G++ + L++M RGF
Sbjct: 300 AGKMADAYDLLRDMRRRGF 318
>AT1G05670.2 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transferase
family protein | chr1:1698574-1702715 REVERSE
Length = 1184
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 71 HLADELLLE--MKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVS 128
H+ D + M G P+ T + ++ + G L A + E+ +P+I +
Sbjct: 879 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938
Query: 129 ELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSR 188
+++ KSG E K++ + + ++ Y+ + + G++ + LKEM+ +
Sbjct: 939 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 998
Query: 189 GFSVDFATGNTFIKYYSIHGSLTEMESACNRL 220
G T N + + +HG L + E N +
Sbjct: 999 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 75/156 (48%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
V +L+ L K+ A+ELL EM G P+ T ++++ ++G + +A + E
Sbjct: 900 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 959
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
+ + L+ AY KSG+ ++ ++IL ++ +++ ++ F G
Sbjct: 960 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 1019
Query: 175 IQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSL 210
++ E L M+++G + + T N+ +K Y I +L
Sbjct: 1020 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 1055
>AT1G05670.1 | Symbols: | UDP-glucoronosyl/UDP-glucosyl transferase
family protein | chr1:1698574-1702715 REVERSE
Length = 1184
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 71 HLADELLLE--MKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVS 128
H+ D + M G P+ T + ++ + G L A + E+ +P+I +
Sbjct: 879 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938
Query: 129 ELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSR 188
+++ KSG E K++ + + ++ Y+ + + G++ + LKEM+ +
Sbjct: 939 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 998
Query: 189 GFSVDFATGNTFIKYYSIHGSLTEMESACNRL 220
G T N + + +HG L + E N +
Sbjct: 999 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 75/156 (48%)
Query: 55 VDCASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEE 114
V +L+ L K+ A+ELL EM G P+ T ++++ ++G + +A + E
Sbjct: 900 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 959
Query: 115 ILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQ 174
+ + L+ AY KSG+ ++ ++IL ++ +++ ++ F G
Sbjct: 960 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 1019
Query: 175 IQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSL 210
++ E L M+++G + + T N+ +K Y I +L
Sbjct: 1020 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 1055
>AT5G61990.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24900186-24903110 REVERSE
Length = 974
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 46 RSVYGKEIFVDCAS---LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAEN 102
RS+ + I D + L+ L K A+E+ EM+ +G P + ++ +++
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640
Query: 103 GLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAY 162
G + +A SI++E++ P++ I + L+ + +SG+ + K++LD++S Y
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Query: 163 SLAISCFGNGGQIQLMENTLKEMVSRGFSVD 193
I + G + EM +G D
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
>AT3G18110.1 | Symbols: EMB1270 | EMB1270 (embryo defective 1270) |
chr3:6204940-6209691 REVERSE
Length = 1429
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ GK+++ A+ ++ ++ G P T +++M YA+ G +A++I+ ++
Sbjct: 757 DIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD 816
Query: 119 SFEPSIQ--------------------IVSEL---------------ISAYGKSGQFNEV 143
P+++ +V EL + A+ ++G EV
Sbjct: 817 GPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEV 876
Query: 144 KKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKY 203
KKI + + + Y + I G +++ E + EM F V+ A N+ +K
Sbjct: 877 KKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKM 936
Query: 204 YS 205
Y+
Sbjct: 937 YT 938
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%)
Query: 71 HLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSEL 130
+LA ELL +++ G P T + ++ + + L A ++E++ + +P + + +
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338
Query: 131 ISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGF 190
IS YG+ G E +++ +L F Y+ + F + ++ ++M GF
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398
Query: 191 SVDFATGNTFIKYYSIHGSL 210
D T NT I Y G L
Sbjct: 399 GKDEMTYNTIIHMYGKQGQL 418
>AT1G62720.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G62680.1); Has 25425
Blast hits to 6071 proteins in 187 species: Archae - 4;
Bacteria - 14; Metazoa - 596; Fungi - 591; Plants -
23031; Viruses - 0; Other Eukaryotes - 1189 (source:
NCBI BLink). | chr1:23227574-23229031 FORWARD
Length = 485
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A L+ +M + VP+ T +A++ + + G +A ++EE+ +P + + LI+
Sbjct: 228 AARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 287
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
G+ +E K++LD + Y+ I+ F ++ +EM RG
Sbjct: 288 GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG 347
Query: 193 DFATGNTFIKYY 204
D T NT I+ Y
Sbjct: 348 DTITYNTIIQGY 359
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT5G46100.1). | chr4:575843-577243 REVERSE
Length = 466
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+Q +K + A ELL +M ++G+VP + + ++ L +A + +
Sbjct: 231 LIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKG 290
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
P + + +I + + + + +K+LD + + S +Y I + G +
Sbjct: 291 CNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGK 350
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACN 218
L+EM+S+GFS F+ N +K + S ++E AC+
Sbjct: 351 KYLEEMISKGFSPHFSVSNCLVKGFC---SFGKVEEACD 386
>AT1G62680.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
shoot apex, leaf whorl, flower, seed; EXPRESSED DURING:
F mature embryo stage, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT1G63130.1); Has
26421 Blast hits to 6237 proteins in 192 species: Archae
- 5; Bacteria - 22; Metazoa - 845; Fungi - 755; Plants -
23373; Viruses - 0; Other Eukaryotes - 1421 (source:
NCBI BLink). | chr1:23208247-23209893 REVERSE
Length = 548
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A LL +M + P+ T SA++ + +NG + +A+ ++EE++ S +P I S LI+
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
+ +E ++ D + + +Y+ I+ F +++ +EM RG
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363
Query: 193 DFATGNTFIKYYSIHGSLTEME 214
+ T NT I+ + G + + +
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQ 385
>AT5G01110.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:42114-44303 REVERSE
Length = 729
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ L K++M AD+L EM + P + TL+ ++ + + G L A +++++
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+ + L+ +GK G + K+I + +YS+ ++ + G +
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMES 215
EM+S+ N+ IK Y G+ ++ ES
Sbjct: 570 FRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606
>AT5G50280.1 | Symbols: EMB1006 | EMB1006 (embryo defective 1006) |
chr5:20459238-20461504 FORWARD
Length = 723
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 36/178 (20%)
Query: 60 LVQTLGK-KRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
L+ G+ K+M+ +A + L MK G PS+ + +A++ Y+ +G +A + +EE+
Sbjct: 455 LISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKE 514
Query: 119 SFEPSIQIVSELISAY---GKSGQFNEVKKIL-------DQLSY---------------- 152
+PS++ + ++ A+ G +G+ E+ K++ +++Y
Sbjct: 515 GIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEA 574
Query: 153 ----SNFSSLH-----EAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFI 201
S FS + Y++ ++ + GGQ + LKEM + D T +T I
Sbjct: 575 RDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMI 632
>AT4G16390.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885), Smr protein/MutS2 C-terminal
(InterPro:IPR002625); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT5G46580.1); Has 19821 Blast hits to 5782
proteins in 183 species: Archae - 2; Bacteria - 24;
Metazoa - 276; Fungi - 350; Plants - 18437; Viruses - 0;
Other Eukaryotes - 732 (source: NCBI BLink). |
chr4:9257985-9260093 FORWARD
Length = 702
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
+++L EM +G P N+T + ++ C +NG+ +A +E++ S EP ++ +I
Sbjct: 194 SEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMID 253
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
AYG++G + + D+ + +S I +G G N +EM + G
Sbjct: 254 AYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKP 313
Query: 193 DFATGNTFI 201
+ N I
Sbjct: 314 NLVIYNRLI 322
>AT5G65560.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:26201012-26203759 REVERSE
Length = 915
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 65 GKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSI 124
GK HL +L +M S+ +P++ T +A++ +G L +A + E+++ +P++
Sbjct: 546 GKVDEAHL---MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV 602
Query: 125 QIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKE 184
+ LI K G F+ Q+ S Y+ I + G++ E+ + +
Sbjct: 603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 185 MVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSR 224
M G S D T ++ IK Y G L + A + LKR R
Sbjct: 663 MRENGVSPDLFTYSSLIKGY---GDLGQTNFAFDVLKRMR 699
>AT2G15630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:6814521-6816404 FORWARD
Length = 627
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILS 117
SL+ L +K T ADEL ++ +G P ++ +M + G + +A S+ +E+
Sbjct: 436 TSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDM 495
Query: 118 TSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQL 177
S P + L+ G+F E ++++ ++ H +Y+ IS + G +
Sbjct: 496 MSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKH 555
Query: 178 MENTLKEMVSRGFSVDFATGNTFIK 202
EM+S GF+ T N +K
Sbjct: 556 AFMVRDEMLSLGFNPTLLTYNALLK 580
>AT5G61370.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24672008-24673471 REVERSE
Length = 487
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAE-------NGLLPQAQSIWEEILSTSFEPSIQ 125
A ++ +MKS G P ++++ C E +GL+P+A +I E+ S +P+
Sbjct: 227 ARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSM 286
Query: 126 IVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISC------FGNGGQIQLME 179
+ L+S G++ + E +IL+Q+ S +Y + FG G QI
Sbjct: 287 SYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQI---- 342
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEME 214
+ EM+ RGF + F YY + G L +E
Sbjct: 343 --VDEMIERGFRPE----RKF--YYDLIGVLCGVE 369
>AT1G20300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:7029701-7031314 FORWARD
Length = 537
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 80 MKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQ 139
M+ G VP S ++ + +AQS ++ L FEP + + + L+ + ++G+
Sbjct: 212 MEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDS-LKDRFEPDVIVYTNLVRGWCRAGE 270
Query: 140 FNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNT 199
+E +K+ ++ + YS+ I GQI + +M+ G + + T N
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 200 FIKYYSIHGSLTEMESACNRLKR 222
++ + G ++ N++K+
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKK 353
>AT1G10910.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: PTAC2 (PLASTID
TRANSCRIPTIONALLY ACTIVE2) (TAIR:AT1G74850.1); Has 17570
Blast hits to 5782 proteins in 175 species: Archae - 1;
Bacteria - 18; Metazoa - 305; Fungi - 261; Plants -
16266; Viruses - 0; Other Eukaryotes - 719 (source: NCBI
BLink). | chr1:3639908-3643974 FORWARD
Length = 664
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
ADEL+ EMKS G VP+ ++ ++ Y + GL +++ + E+ S + + L+
Sbjct: 291 ADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMD 350
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
K+G+ E + I D + S A S+ IS + + + ++ +
Sbjct: 351 GLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKC 410
Query: 193 DFATGNTFIKYYSIHGSLTEMESACNRLKR 222
D NT + Y G EMES +K+
Sbjct: 411 DLVMLNTMLCAYCRAG---EMESVMRMMKK 437
>AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23412854-23414746 FORWARD
Length = 630
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ L + + A L EM ++G P+ T ++++ C G A + +++
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 320
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ S LI A+ K G+ E +K+ D++ + YS I+ F ++
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
++ + M+S+ + T NT IK
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIK 404
>AT1G64580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23985078-23988740 REVERSE
Length = 1052
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A +L +M + P T +A++ + + G L +AQ +++E++ +S +P+ + +I+
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
G+ + KK D ++ Y+ IS F + + M GF+
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNA 349
Query: 193 DFATGNTFIKYYSIHGSL 210
D T NT I Y G L
Sbjct: 350 DIFTYNTLIHGYCQVGKL 367
>AT2G16880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:7312262-7314493 REVERSE
Length = 743
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
SL+ L T LA E E+ G +P +ST +++++ Y + G + +A + E +
Sbjct: 526 SLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKH 585
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHE-------AYSLAISCFGN 171
SF+P + L++ K G + + + + F++L E Y+ IS F
Sbjct: 586 SFKPDNYTCNILLNGLCKEG--------MTEKALNFFNTLIEEREVDTVTYNTMISAFCK 637
Query: 172 GGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEME 214
+++ + L EM +G D T N+FI G L+E +
Sbjct: 638 DKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETD 680
>AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23299060-23303162 FORWARD
Length = 1133
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A LL +M + P+ T SA++ + + G L +A+ ++EE++ S +P+I S LI+
Sbjct: 912 ASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 971
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
+ + E K++L+ + + Y+ I+ F ++ +EM RG
Sbjct: 972 GFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGL-- 1029
Query: 193 DFATGNTFIKYYSIHG 208
GNT IHG
Sbjct: 1030 ---VGNTVTYTTLIHG 1042
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ L K + A L EM ++G P T S+++ C G A + +++
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ S LI A+ K G+ E +K+ D++ + YS I+ F ++
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
++ + M+S+ + T +T IK
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIK 406
>AT2G31400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:13387201-13390550 REVERSE
Length = 918
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%)
Query: 79 EMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSG 138
EM+ G P T ++++ + GL A+++++E+ + E + + L+ A K G
Sbjct: 329 EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 139 QFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGN 198
Q + +IL Q+ +YS I F G+ N EM G ++D + N
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448
Query: 199 TFIKYYSIHG 208
T + Y+ G
Sbjct: 449 TLLSIYTKVG 458
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 57 CASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEIL 116
++++ TLG+ +A + + GY + SA++ Y +GL +A S++ +
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295
Query: 117 STSFEPSIQIVSELISAYGKSG-QFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQI 175
P++ + +I A GK G +F +V K D++ + ++ ++ GG
Sbjct: 296 EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLW 355
Query: 176 QLMENTLKEMVSRGFSVDFATGNTFI 201
+ N EM +R D + NT +
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLL 381
>AT2G32630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:13844834-13846708 FORWARD
Length = 624
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ K+R + +L MK G V + T + +M +NG + A+ +++E+
Sbjct: 264 TIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRER 323
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
E + + + LIS + G + D+L+ S Y I G++
Sbjct: 324 GIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAA 383
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTE 212
E + EM S+G ++ NT I Y G + E
Sbjct: 384 EILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDE 417
>AT5G41170.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:16478860-16480443 REVERSE
Length = 527
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 68/166 (40%)
Query: 57 CASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEIL 116
C L+ + +LA L +M G+ P T ++++ + + +A S+ +++
Sbjct: 110 CNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV 169
Query: 117 STSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQ 176
+P + + + +I + K+G N + DQ+ Y+ ++ N G+ +
Sbjct: 170 EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR 229
Query: 177 LMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKR 222
++ L+ M R D T N I + G + E N + R
Sbjct: 230 DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR 275
>AT5G11310.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3606490-3608409 FORWARD
Length = 602
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A++L EMK+ P+ T ++ Y + A + EE+ E + + + +I
Sbjct: 269 AEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIID 328
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
G++G+ +E ++++ Y+ + F G + LK M++RG
Sbjct: 329 GLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDP 388
Query: 193 DFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDR 229
T N F KY+S H E + +L + H DR
Sbjct: 389 TTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDR 425
>AT1G62930.1 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT1G63130.1); Has
29147 Blast hits to 6292 proteins in 192 species: Archae
- 8; Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants
- 25291; Viruses - 0; Other Eukaryotes - 1710 (source:
NCBI BLink). | chr1:23306534-23308423 FORWARD
Length = 629
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+++ L + + A L EM ++G P+ T ++++ C G A + +++
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P++ S LI A+ K G+ E +K+ D++ + YS I+ F ++
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Query: 179 ENTLKEMVSRGFSVDFATGNTFIK 202
++ + M+S+ + T NT IK
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIK 403
>AT2G41720.2 | Symbols: EMB2654 | EMB2654 (EMBRYO DEFECTIVE 2654) |
chr2:17403861-17406648 REVERSE
Length = 683
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%)
Query: 83 QGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNE 142
+ Y N + M+ +A + + QA+ ++ E+ S +P + LI+A+G++GQ+
Sbjct: 5 KNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRW 64
Query: 143 VKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIK 202
++D + + + Y+ I+ G+ G + K+M G D T N +
Sbjct: 65 AMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLS 124
Query: 203 YY 204
Y
Sbjct: 125 AY 126
>AT5G59900.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:24123983-24126706 REVERSE
Length = 907
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
Query: 46 RSVYGKEIFVDCAS---LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAEN 102
+ + GK++ D + LV L K + + E++ EM + PS + +S+++ +
Sbjct: 286 KDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKR 345
Query: 103 GLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAY 162
G + +A ++ + ++ P++ + + LI + K +F+E + + D++ Y
Sbjct: 346 GKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTY 405
Query: 163 SLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEME 214
S+ I F G++ + L EMV G + N+ I + G ++ E
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
>AT1G06710.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:2057279-2060119 REVERSE
Length = 946
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+L+ L K A E+ EM G+ + T S+++ Y + A + ++L
Sbjct: 638 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 697
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
S P++ I +E+I K G+ +E K++ + Y+ I FG G+I+
Sbjct: 698 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETC 757
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHLIDREGIR 233
L+ M S+G + ++ T I + +G+L + +K++ G R
Sbjct: 758 LELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYR 812
>AT5G38730.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:15510901-15512691 FORWARD
Length = 596
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%)
Query: 91 TLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQL 150
S +MI YA+ G++ + ++E+I S +P +Q + L+++ K + V KI ++
Sbjct: 135 VFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKM 194
Query: 151 SYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSVDFATGNTFIKYYSIHGSL 210
+ Y++ + G + E L EM +G D T NT I Y
Sbjct: 195 VKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMH 254
Query: 211 TEMESACNRLKRS 223
E S +R++RS
Sbjct: 255 FEALSVQDRMERS 267
>AT5G14820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:4792072-4793868 REVERSE
Length = 598
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 67/164 (40%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ G ++ ELL EM+ +G+ P T +A++ A + I+ +++
Sbjct: 408 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 467
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
EPSI + ++ +Y + + + + D++ +Y++ I + G+ +
Sbjct: 468 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
L+EM+ +G N F + G E R K S
Sbjct: 528 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFS 571
>AT3G62540.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:23133514-23135313 REVERSE
Length = 599
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 67/164 (40%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ G ++ ELL EM+ +G+ P T +A++ A + I+ +++
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 468
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
EPSI + ++ +Y + + + + D++ +Y++ I + G+ +
Sbjct: 469 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
L+EM+ +G N F + G E R K S
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFS 572
>AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911388-3913838 FORWARD
Length = 816
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+L++ L K M A+ +L EMK G+VP T S + Y+ N A ++E + +
Sbjct: 289 TLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDS 348
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+ + S L++A K G+ + ++IL + Y+ I + G +
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGA 408
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLK 221
++ M +G D N I+ + G + E N++K
Sbjct: 409 RMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451
>AT1G09820.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3190594-3192414 REVERSE
Length = 606
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 1/168 (0%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+L+ K M A ++ +K QG VP+ + ++ Y + G + ++ EE+
Sbjct: 371 ALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
P + + LI+ ++G KK+ DQL+ L + + + + G+ +
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL-VTFHILMEGYCRKGESRKA 489
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRSRHL 226
LKEM G T N +K Y G+L + ++++ R L
Sbjct: 490 AMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537
>AT5G06400.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1955959-1959051 FORWARD
Length = 1030
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 58 ASLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMM--ICYAENGLLPQAQSIWEEI 115
A ++ G+ +T++A EMK G +PS+ST ++ +C + + +A + E+
Sbjct: 717 AIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREM 776
Query: 116 LSTSFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQI 175
+ + F P ++V + + + G + K LD L F + AYS+ I G+
Sbjct: 777 IRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCRIGK- 834
Query: 176 QLMENTLKEMVSRGFSVDFATGNTFIKYYS----IHGSLT--EMESACNRLKRSRHLIDR 229
+E L E+ S F + + Y+ +HG L +++ A +++ + + +
Sbjct: 835 --LEEALSELAS------FEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTK 886
Query: 230 EGI 232
G+
Sbjct: 887 PGV 889
>AT1G74580.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28020777-28023068 FORWARD
Length = 763
Score = 47.8 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 59 SLVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILST 118
+L+ K M LA+ ++ + G+VP T +++ G +A +++ E L
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 119 SFEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLM 178
+P++ + + LI G E ++ +++S + +++ ++ G +
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 179 ENTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESA 216
+ +K M+S+G+ D T N I YS +ME+A
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQ---LKMENA 480
>AT3G62470.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:23106600-23108399 REVERSE
Length = 599
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 67/164 (40%)
Query: 60 LVQTLGKKRMTHLADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTS 119
L+ G ++ ELL EM+ +G+ P T +A++ A + A I+ +++
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE 468
Query: 120 FEPSIQIVSELISAYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLME 179
EPSI + ++ +Y + + + + +++ +Y++ I G+ +
Sbjct: 469 IEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREAC 528
Query: 180 NTLKEMVSRGFSVDFATGNTFIKYYSIHGSLTEMESACNRLKRS 223
L+EM+ +G N F + G E R K S
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFS 572
>AT1G80880.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:30395194-30396921 REVERSE
Length = 540
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 61/138 (44%)
Query: 73 ADELLLEMKSQGYVPSNSTLSAMMICYAENGLLPQAQSIWEEILSTSFEPSIQIVSELIS 132
A + EM + P+ + S M+ C+++ G L + +++E+ P I++ + L+
Sbjct: 278 AKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVY 337
Query: 133 AYGKSGQFNEVKKILDQLSYSNFSSLHEAYSLAISCFGNGGQIQLMENTLKEMVSRGFSV 192
+ F+E K++ +L+ Y+ I G++ + N L M+S S
Sbjct: 338 VLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSP 397
Query: 193 DFATGNTFIKYYSIHGSL 210
T + F++ + +L
Sbjct: 398 TVDTFHAFLEAVNFEKTL 415