Jatropha Genome Database

JcCB0102421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102421.10 - phase: 0 /partial
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00560.1 | Symbols:  | methionine adenosyltransferase regulat...   213   4e-56
AT4G00560.2 | Symbols:  | methionine adenosyltransferase regulat...   212   7e-56
AT4G00560.3 | Symbols:  | methionine adenosyltransferase regulat...   211   2e-55

>AT4G00560.1 | Symbols:  | methionine adenosyltransferase regulatory
           beta subunit-related | chr4:240798-242267 REVERSE
          Length = 327

 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 126/169 (74%), Gaps = 12/169 (7%)

Query: 1   MEKKNRVLVIGGTGYLGQHLLQGLS-------EIKERPFDIAFTYHXXXXXXXXXXXXXX 53
           MEKK +VL++GGTGYLGQHLLQ  +       E+    +D+AFT+H              
Sbjct: 1   MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECEL----YDVAFTHHSSPLPARLLDAFP- 55

Query: 54  HSRSFRVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWL 113
           HS +F VD+K+G G  +IS +F QPDVVVNCAA+SVPRACE DP +AMSINVP SLVNWL
Sbjct: 56  HSPAFPVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWL 115

Query: 114 SSFELNKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           SSFE NKTLLIHLSTDQVY+G+KSFYKEEDE V VNVYGKSK+AAE  I
Sbjct: 116 SSFETNKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLI 164


>AT4G00560.2 | Symbols:  | methionine adenosyltransferase regulatory
           beta subunit-related | chr4:241135-242267 REVERSE
          Length = 201

 Score =  212 bits (540), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 126/169 (74%), Gaps = 12/169 (7%)

Query: 1   MEKKNRVLVIGGTGYLGQHLLQ-------GLSEIKERPFDIAFTYHXXXXXXXXXXXXXX 53
           MEKK +VL++GGTGYLGQHLLQ       G  E+    +D+AFT+H              
Sbjct: 1   MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECEL----YDVAFTHHSSPLPARLLDAFP- 55

Query: 54  HSRSFRVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWL 113
           HS +F VD+K+G G  +IS +F QPDVVVNCAA+SVPRACE DP +AMSINVP SLVNWL
Sbjct: 56  HSPAFPVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWL 115

Query: 114 SSFELNKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           SSFE NKTLLIHLSTDQVY+G+KSFYKEEDE V VNVYGKSK+AAE  I
Sbjct: 116 SSFETNKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLI 164


>AT4G00560.3 | Symbols:  | methionine adenosyltransferase regulatory
           beta subunit-related | chr4:241194-242267 REVERSE
          Length = 253

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/165 (64%), Positives = 125/165 (75%), Gaps = 4/165 (2%)

Query: 1   MEKKNRVLVIGGTGYLGQHLLQGLSEI---KERPFDIAFTYHXXXXXXXXXXXXXXHSRS 57
           MEKK +VL++GGTGYLGQHLLQ  +     +   +D+AFT+H              HS +
Sbjct: 1   MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFP-HSPA 59

Query: 58  FRVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFE 117
           F VD+K+G G  +IS +F QPDVVVNCAA+SVPRACE DP +AMSINVP SLVNWLSSFE
Sbjct: 60  FPVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFE 119

Query: 118 LNKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
            NKTLLIHLSTDQVY+G+KSFYKEEDE V VNVYGKSK+AAE  I
Sbjct: 120 TNKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLI 164