Jatropha Genome Database

JcCB0102141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102141.10 - phase: 0 /partial
         (158 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12400.1 | Symbols:  | PHD finger transcription factor, putat...    60   6e-10
AT3G58090.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    47   6e-06

>AT5G12400.1 | Symbols:  | PHD finger transcription factor, putative
           | chr5:4013813-4020909 FORWARD
          Length = 1595

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 36/153 (23%)

Query: 1   MEFIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLL-----ER 55
           ME +G++V KE +G G  SG V+S D SSGFFEIVYE+G +E  +  EVV+L+      +
Sbjct: 1   MELVGKVVRKEIQGIGFCSGTVRSRD-SSGFFEIVYENGVTEISELDEVVALVMGDGKSQ 59

Query: 56  KEAVPVDXXXXXXXXXXXXXXXXXXXXXNQGQSGNSISRSQPIEETLGRPSVVEANVNFD 115
           + +VPV                        G+     SR   + E + R S     V   
Sbjct: 60  ENSVPVKKKRV-------------------GRKPKKRSRVARVVE-IKRESSGLNEV--- 96

Query: 116 MNRNVDLNDGFTGDLGEGEIANGNLRNMNVDLN 148
              NVDLNDG   + G   ++  NLR  NVDLN
Sbjct: 97  ---NVDLNDGVAENSG---VSEENLRG-NVDLN 122


>AT3G58090.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 11 growth stages; CONTAINS
           InterPro DOMAIN/s: Plant disease resistance response
           protein (InterPro:IPR004265); BEST Arabidopsis thaliana
           protein match is: disease resistance-responsive family
           protein (TAIR:AT1G65870.1). | chr3:21512479-21513905
           REVERSE
          Length = 271

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 5   GRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLL 53
           GR V K F G   YSG V  +D  SG++ + YEDGDSE+LD+SE+  +L
Sbjct: 61  GREVRKFFLGR-YYSGTVTKFDKQSGWYRVEYEDGDSEDLDWSELEEVL 108