Jatropha Genome Database

JcCB0101331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101331.10 + phase: 0 
         (103 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS THA...    96   5e-21

>AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS
           THALIANA RADIATION SENSITIVE) | chr5:26434236-26437091
           FORWARD
          Length = 599

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 6/93 (6%)

Query: 2   QIRFPCEDFDDLFMGPRANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVEGVK 61
           +IR   EDFD+   G + +       G  RS+  +LW+DKY+PR+LEEL+VHKKKV+ VK
Sbjct: 63  KIRLSFEDFDEALSGFKVS------SGYERSKNTDLWVDKYRPRTLEELSVHKKKVDEVK 116

Query: 62  IWFEERLRASKEKIENNVLVITGQAGVGKSVSF 94
           +WF+E L   K  + NNVL++TGQAGVGKS + 
Sbjct: 117 LWFQESLDFLKNGLRNNVLLVTGQAGVGKSATI 149