Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100521.10 - phase: 0 /partial
         (107 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein...    65   9e-12
AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Ind...    55   7e-09

>AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr5:26641914-26643883 REVERSE
          Length = 500

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 21  SVTAGLGLGLPCDGGSG---LKELMMGTPSVFGPKQTTLDFXXXXXXXXXXXXXXXXXXI 77
           S+  GLGLGLPC  G     LKELMMG  SVFGPKQTTLDF                  +
Sbjct: 413 SLAPGLGLGLPCSSGGSGSGLKELMMGNSSVFGPKQTTLDF--LGLGRAVGNGGNTGGGL 470

Query: 78  TSIGSGMDVAAAAASFGGGEYSGKDLGRSS 107
           +++ + +        FG GE+SGKD+GRSS
Sbjct: 471 SALLTSIGGGGGIDLFGSGEFSGKDIGRSS 500


>AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 2); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr3:18840945-18842829 FORWARD
          Length = 452

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 33  DGGSGLKELMMGTPSVFGPKQTTLDFX-XXXXXXXXXXXXXXXXXITSIGSGMDVAAAAA 91
           +  SGLKELMMG  SVFGPKQTTLDF                   +   G+G+D+   A 
Sbjct: 379 ESSSGLKELMMGNSSVFGPKQTTLDFLGLGRAVGNGNGPSNGLSTLVGGGTGIDM---AT 435

Query: 92  SFGGGEYSGKDLGR 105
           +FG GE+SGKD+ R
Sbjct: 436 TFGSGEFSGKDISR 449