Jatropha Genome Database

JcCB0100231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100231.10 - phase: 1 /partial
         (489 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44430.1 | Symbols:  | DNA-binding bromodomain-containing pro...   231   1e-60
AT3G60110.1 | Symbols:  | DNA binding | chr3:22197993-22201159 F...   182   4e-46
AT3G57980.1 | Symbols:  | DNA-binding bromodomain-containing pro...   144   1e-34
AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing pro...   122   5e-28
AT1G61215.1 | Symbols: BRD4 | BRD4 (BROMODOMAIN 4); DNA binding ...    81   1e-15

>AT2G44430.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr2:18333603-18336165 FORWARD
          Length = 646

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 201/505 (39%), Positives = 268/505 (53%), Gaps = 93/505 (18%)

Query: 23  RKNRASAGDESDRENRSVNEXXXXXXXXXXXXXXXXXLEAEPVRDVPGETAPVLSGSNSK 82
           R+   SA +ESDRENRS+NE                  E     D P +T    SG++  
Sbjct: 197 REKAVSAAEESDRENRSMNESNSTATAGE---------EERVCGDEPSQTREDDSGNDKN 247

Query: 83  P-------------------VRGGEESH--ELGDSATQLSSEVQSSASLGSXXXXXXXXX 121
           P                    RG E SH  ELG+S T  S   +     G          
Sbjct: 248 PDPDPVNKDATAAEEEEGSVSRGSEASHSDELGESGTSESKWKRKRRKQG---------- 297

Query: 122 XEDVGGDGIKGATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETI 181
               G   I+ A  KS+PL++L+++IRS+  GS FE RL SQE + YK++V+QHLD+ETI
Sbjct: 298 ----GAGEIRSAESKSQPLISLLDLIRSHPRGSLFERRLRSQEAKDYKSMVKQHLDIETI 353

Query: 182 QTRLEQGSYASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSD 241
           Q +L+QGSY SS+L FYRDL LLF NAIVFFP +S+ES AA+ELR++V+ EM+KET K+ 
Sbjct: 354 QRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLSSSESMAAHELRAVVSQEMRKETGKA- 412

Query: 242 STVAPLDIPPQP------KSEPERSDSLLAKHKASAPIVVCRKRSSLSAKPSPLSFVQKI 295
               P  I  +       K++ E SDS L++ K+S P+VVC+KR S+SAK SP S     
Sbjct: 413 ---GPRLIKQEASGMRSGKADAETSDSSLSRQKSSGPLVVCKKRRSVSAKASPSSSSFS- 468

Query: 296 EHQQQSSDNEPVSDLKPLAVEQSSLKIESKEKPVTGTRSSRRSNK-NLVKSTNTPSKKP- 353
             Q+  +  E +S              E K+   TG RSSRR+NK   V + NT + K  
Sbjct: 469 --QKDDTKEETLS--------------EEKDNIATGVRSSRRANKVAAVVANNTKTGKGR 512

Query: 354 NVSPVTKVST------ADKPETPKIDKKKAEPSSLDKKRSAVDFLKRIKKNSPVEVSKKN 407
           N    T+  T      + K +T K +KK     S DKK+S  DFLKR+KKNSP + +K  
Sbjct: 513 NKQKQTESKTNSSNDNSSKQDTGKTEKKTV---SADKKKSVADFLKRLKKNSPQKEAKDQ 569

Query: 408 TRGAANGAGERKRDSPGKGEKGKERVSRRNGDDKQMEESSPSKKNLGRPTKKGAEAS-KV 466
            +   N     K+DS     K +E  S   G  K   E++P K+  GRP KK AEA+   
Sbjct: 570 NKSGGNV----KKDSKT---KPRELRSSSVGKKKAEVENTPVKRAPGRPQKKTAEATASA 622

Query: 467 SGKHGRDSG--GKEVAKRPKKRSRR 489
           SGK GRD+G  GK+  K+PKKR R+
Sbjct: 623 SGKRGRDTGSTGKD-NKQPKKRIRK 646


>AT3G60110.1 | Symbols:  | DNA binding | chr3:22197993-22201159
           FORWARD
          Length = 641

 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 211/374 (56%), Gaps = 39/374 (10%)

Query: 130 IKGATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGS 189
           +K A  KS+PL+ ++++IRS+  GS FE RL SQ+T+ YK L+RQHLD++TI+ ++E+GS
Sbjct: 293 VKSAGDKSQPLIDIIKLIRSHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKKMEKGS 352

Query: 190 YASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDSTVAPLDI 249
           Y SS+LSFYRDL LLF NAIVFFP +S+ES AA ELR+LV+NEMKK T K    V     
Sbjct: 353 YVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEMKKRTGKLGHCVI---- 408

Query: 250 PPQPKSEPERSDSLLAKHKASA-PIVVCRKRSSLSAKPSPLSFV-QKIEHQQQSSDNEPV 307
               KSE E S   +++ K+S   +V C+K+SS   K SP S   QK E + Q    E +
Sbjct: 409 ----KSEAESS---VSRQKSSVLSLVPCKKKSSALKKTSPSSSSRQKDEKKSQEVSEEKI 461

Query: 308 SDLKPLAVEQSSLKIESKEKPVTGTRSSRRSNKNLVKSTNTPSKKPNVSPVTKVSTADKP 367
                    +SS +   +   V     + R+  N+ K T+T ++  +     K   +   
Sbjct: 462 VTTTATTSARSSRRTSKEIAVVAKDTKTGRAKNNIKKQTDTKTESSDDDDDEKEENS--- 518

Query: 368 ETPKIDKKKAEPSSLDKKRSAVDFLKRIKKNSPV---EVSKKNTR---GAANGAGERKRD 421
              K +KK    +  DKK+S  DFLKRIKKNSP    E + KN +   G      + ++ 
Sbjct: 519 ---KTEKK----TVADKKKSVADFLKRIKKNSPQKGKETTSKNQKKNDGNVKKENDHQKK 571

Query: 422 SPGKGEKGKERVSRR-----NGDDKQMEESSPSKKNLGR-PTKKGAEASKVSGKHGRDSG 475
           S G  +K   +V  R      G  K   E++ SK +  R  TK+ AE +  +GK GR+SG
Sbjct: 572 SDGNVKKENSKVKPRELRSSTGKKKVEVENNNSKSSSKRKQTKETAEVA--TGKRGRESG 629

Query: 476 GKEVAKRPKKRSRR 489
             +  K+P+KRSRR
Sbjct: 630 KDD--KQPRKRSRR 641


>AT3G57980.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr3:21466919-21469148 REVERSE
          Length = 632

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 216/454 (47%), Gaps = 77/454 (16%)

Query: 81  SKPVRGGEESHEL--------GDSATQLSSEVQSSASLGSXXXXXXXXXXEDVGGDGIKG 132
           ++P R G +S EL        G+  T+ +S+ QSSAS                    +  
Sbjct: 211 AEPKREGNDSPELVESMDESKGEEDTKETSDGQSSASFPRKETVDQDQPDNKDQSLTVNK 270

Query: 133 ATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYAS 192
             V+S+PL   +EI++S+  GS F  RLE+QET  Y  ++RQH+D E I++R+E+G Y +
Sbjct: 271 IFVESQPLSDFIEILQSHPIGSHFSRRLETQETSDYYRIIRQHIDFEMIRSRVEEGYYKT 330

Query: 193 SNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDSTVAPLDIPPQ 252
           +   F+RDLLLL NN  VF+ + S E +AA +L  L+  +M               IP Q
Sbjct: 331 ARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLYQLIKKQMS------------FKIPKQ 378

Query: 253 PKSEPERSDSLLA----------KHKASAPIVVCRKRSSLSAKPSPLSFVQKIEHQQQSS 302
               P + D+L+           K   S PI+ CRKRSSL+ + SP S  + ++ + +  
Sbjct: 379 TLP-PPKEDALVTSKEEVKVSSLKPTLSVPIIACRKRSSLAVR-SPASVTETLKKKTRVV 436

Query: 303 DNEPVSDLKPLAVEQSSLKIESKEKPVTGTRSSRRS---------NKNLVKSTNTP---- 349
              P  D K ++ E+     +  EKP+   + +R +         ++N+  S N      
Sbjct: 437 ---PTVDEKQVSEEEEGRPSDKDEKPIVSKKMARGAAPSTAKKVGSRNVKTSLNAGISNR 493

Query: 350 SKKPNVSPVTKVSTADKPETPKIDKKKAEPSSLDKKRSAVDFLKRIK----KNSPVEVSK 405
            + PN S V K S           KK    S   KK+SA  FLKR+K      + VE  K
Sbjct: 494 GRSPNGSSVLKKSVQ--------QKKGINTSGGSKKQSAASFLKRMKGVSSSETVVETVK 545

Query: 406 KNTRGAANGAGERKRDSPGKGEK--------GKERVSRRNGDDKQMEESSPSKKNLGRPT 457
             +     GA +RK +S  K EK        G++R++   G    +E+ SP+KKN G  +
Sbjct: 546 AESSNGKRGAEQRKSNS--KSEKVDAVKLPAGQKRLT---GKRPTIEKGSPTKKNSGVAS 600

Query: 458 KKGAEASKVSGKHGRDSGGKEV--AKRPKKRSRR 489
           K+G   + +  K   ++  KE   + RPKKRS+R
Sbjct: 601 KRG--TASLMAKRDSETSEKETGSSTRPKKRSKR 632


>AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr2:17572463-17574564 FORWARD
          Length = 631

 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 221/454 (48%), Gaps = 64/454 (14%)

Query: 71  ETAPVLSGSNSKPVRGGE--ESHELGDSATQLSSEVQSSASLGSXXXXXXXXXXEDVGGD 128
           E  P  +    +PV   E  ES +      +++S+VQSSASL            ED    
Sbjct: 207 EKEPTTNSERVEPVSVTELIESEDGASRGEEITSDVQSSASL--PRKGTSEPDKEDQSPT 264

Query: 129 GIKGATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQG 188
             K  TV+S+PL++ +EI+ S+  GS F  RLE QET  Y  ++R+H+D E I+ R+E G
Sbjct: 265 SAKDFTVESQPLISFVEILLSHPCGSHFSRRLERQETIEYGTIIREHVDFEIIRKRVEGG 324

Query: 189 SYASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLV----TNEMKKETQKSDSTV 244
            Y S  ++F+RDLLLL NNA VF+ + S+E   A +L  LV    T  +K  + + + ++
Sbjct: 325 LYKSWRINFFRDLLLLVNNARVFYHRGSSEFKFAEQLHQLVKKQMTTTLKGLSNRDEISI 384

Query: 245 AP--LDIPPQPKSEPERSDSLLAKHKASAP-IVVCRKRSSLSAKPS------PLSFVQKI 295
           +P   ++   P S+P     + +K + S P IV CRKRS+L+AKP       P    +K 
Sbjct: 385 SPPKEEVVAIPSSKP-----VSSKPRMSVPNIVACRKRSALAAKPLLLLPPGPDKKAKKT 439

Query: 296 EHQQQSSDNEPVSDLKPLAVEQSS-----LKIESKEKPVTGTRSSRRSNKNLVKSTNTPS 350
           +H     D +PVSD    A  +       +KI ++ +  +  + + R++KN   S N   
Sbjct: 440 DHVVD-YDEKPVSDKDGEASGKDDDDSLIVKIMTRGRTSSTGKVANRNDKNRDSSLNVDD 498

Query: 351 KKPNVSPVTKVSTADKPETPKIDKKKAEPSSLDKKRSAVDFLKRIKKNSPVEVSKK---- 406
            K                  K+ K   E     KK+ A  FL+R+K  S  +  K+    
Sbjct: 499 SK-----------------DKVKKTDEEKKGGSKKKRAASFLRRMKVGSSDDTLKRSSAA 541

Query: 407 --NTRGAANGAGERKRDSPGKGEKGKERVSRRNGDDKQMEESSPSKK-NLGRPTKKGAEA 463
             +T G   GA +RK +S  K +  K  + +    +K+   +SP K+ N GR +++ A  
Sbjct: 542 DSSTTGKGGGAEQRKNNS-NKADNKKTPIPKIRQTNKK---ASPVKRSNNGRNSEREAAP 597

Query: 464 SK----VSGKHGRDSGGKEVAK----RPKKRSRR 489
           S     +  K  RD+G KE A     R KKR+RR
Sbjct: 598 SSSSYPILAKRSRDAGEKEEASSYSPRLKKRARR 631


>AT1G61215.1 | Symbols: BRD4 | BRD4 (BROMODOMAIN 4); DNA binding |
           chr1:22573173-22575374 FORWARD
          Length = 475

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 20/187 (10%)

Query: 140 LVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNLSFYR 199
           L+ +   I  N     F  RL+SQ+   YK LVR+H+DL+T+Q+R+  G   SS    +R
Sbjct: 269 LMKIYNTIAQNECALVFRRRLDSQKRGRYKKLVRRHMDLDTVQSRI-NGCSISSAKELFR 327

Query: 200 DLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDSTVAPLDIPPQPKSEPER 259
           D LL+ NNA +F+ K + E  +A  LR +VT  ++    +        D PP   S    
Sbjct: 328 DFLLVANNAAIFYSKNTREYKSAVGLRDIVTKSLRHYLTE--------DHPPHRSSITAG 379

Query: 260 SDSLLAKH-KASAPIVVCRKRSSLSAK-----PSPL-SFVQKIEHQQQSSDNEPVSDLKP 312
           S  ++  H K+++P V    R+SL+AK       PL + VQ +       +   V+DL  
Sbjct: 380 STKVVVLHQKSTSPSV----RTSLAAKKPRTGAHPLKTVVQDMAKTSSRGNKRSVTDLPV 435

Query: 313 LAVEQSS 319
            AV+ S+
Sbjct: 436 SAVKSSA 442