Jatropha Genome Database

JcCB0097241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097241.10 + phase: 0 
         (76 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32928.1 | Symbols:  | unknown protein | chr1:11931332-119315...    62   6e-11
AT1G32920.1 | Symbols:  | unknown protein | chr1:11928901-119291...    55   6e-09

>AT1G32928.1 | Symbols:  | unknown protein |
          chr1:11931332-11931586 FORWARD
          Length = 84

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 14/85 (16%)

Query: 1  MNSIFSSFDALCAELLGQTIKSSFASATSYRLLRNPEQRTS-----------SPPQETNQ 49
          MNS+FS+FDA+CAE++G+ +    A++  YR  RN    +S              ++ ++
Sbjct: 1  MNSMFSAFDAMCAEIMGKKVT---AASYVYRSERNSASSSSSVGGQNASLSLKKDEKASK 57

Query: 50 RHQQPLRPPRFAPELDGLNCFETLI 74
              P + PRFA ELDGL+CFET++
Sbjct: 58 NMDLPTKTPRFALELDGLHCFETIV 82


>AT1G32920.1 | Symbols:  | unknown protein |
          chr1:11928901-11929137 FORWARD
          Length = 78

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MNSIFSSFDALCAELLGQTI-KSSFASATSYRLLRNPEQ-RTSSPPQETNQRHQQPLRPP 58
          MNS+FS+FDAL AE++G+ +  SSF + T+        Q +T      ++++     + P
Sbjct: 1  MNSMFSAFDALFAEVMGKNLMASSFTATTATTKPAAAPQTQTQEKANASSKKIGLVQKIP 60

Query: 59 RFAPELDGLNCFETLI 74
          RFA ELDGL+CFET++
Sbjct: 61 RFALELDGLHCFETIV 76