Jatropha Genome Database

JcCB0096691.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096691.20 - phase: 0 
         (377 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR ...   156   2e-38
AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR...   145   3e-35
AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR...   115   4e-26
AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR...   113   2e-25
AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR...   112   3e-25
AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR...   103   1e-22
AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR...   101   7e-22
AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR...    98   7e-21
AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR...    89   4e-18

>AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2);
           transcription activator | chr4:17725533-17727609 REVERSE
          Length = 535

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 11/127 (8%)

Query: 106 NLNGVTVAFTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFF 165
           N  GV   FT +Q  EL+QQALIYKYI+A+VPVP +LLI +K +  P+         G  
Sbjct: 157 NFTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPY---------GSL 207

Query: 166 PSNSLGWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRS 225
           P +S GW +  LG+ G +   D EPGRCRRTDGKKWRCSRD V DQKYCE+H+NRGR+RS
Sbjct: 208 PPSSFGWGTFHLGFAGGNM--DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRS 265

Query: 226 RKPVEAQ 232
           RKPVE Q
Sbjct: 266 RKPVEVQ 272


>AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR
           1); transcription activator | chr2:9728841-9731141
           FORWARD
          Length = 530

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 89/126 (70%), Gaps = 11/126 (8%)

Query: 107 LNGVTVAFTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFP 166
           L GV   F+ +Q  EL+QQALIYKYI+A+VPVP +LL+ LK +  P+         G  P
Sbjct: 127 LTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPY---------GSLP 177

Query: 167 SNSLGWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSR 226
            NS GW S  LG+ G +   D EPGRCRRTDGKKWRCSRD V DQKYCE+H+NRGR+RSR
Sbjct: 178 PNSFGWGSFHLGFSGGNM--DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSR 235

Query: 227 KPVEAQ 232
           KPVE Q
Sbjct: 236 KPVEGQ 241


>AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR
           5); transcription activator | chr3:4608526-4610160
           FORWARD
          Length = 397

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 9/117 (7%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWS 173
           FT +Q  EL+ QALIYKY+ + VPVP  L+  ++ +L       ++  +   P  SLGW 
Sbjct: 17  FTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLD------TSLVSRLLPHQSLGWG 70

Query: 174 SLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
             ++G+       D EPGRCRRTDGKKWRCSR+   D KYCEKHM+RGR R+RK ++
Sbjct: 71  CYQMGF---GRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124


>AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR
           4); transcription activator | chr3:19616177-19618268
           REVERSE
          Length = 380

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 9/119 (7%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHP--YGLSAPSAGFFPSNSLG 171
           F+ +Q  EL+ QALIY+Y+ A   VP  LL+P+K +L      + L  P    FP +   
Sbjct: 83  FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142

Query: 172 WSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
           W      Y G   + D EPGRC+RTDGKKWRCSRD VA  KYC++H++RGR RSRKPVE
Sbjct: 143 W------YWGRG-AMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194


>AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR
           3); transcription activator | chr2:15270300-15272617
           REVERSE
          Length = 398

 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 75/121 (61%), Gaps = 12/121 (9%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKS---NLRPHPYGLSAPSAGFFPSNSL 170
           F+ +Q  EL+ QALIY+Y+ A   VP  LL+P+K    +L P  Y L  P     P    
Sbjct: 77  FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSP-SYFLHHP-LQHLPHYQP 134

Query: 171 GWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
            W      Y+G + + D EPGRCRRTDGKKWRCSRD  A  KYCE+HM+RGR RSRKPVE
Sbjct: 135 AW------YLGRA-AMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 187

Query: 231 A 231
            
Sbjct: 188 T 188


>AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR
           7); transcription activator | chr5:21794636-21795929
           FORWARD
          Length = 365

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 26/117 (22%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWS 173
           FT +Q  EL++QA+IYKY+ AS+PVP +LL+             S+PS+   P N+    
Sbjct: 60  FTNAQLKELERQAMIYKYMIASIPVPFDLLV-------------SSPSSAS-PCNN---- 101

Query: 174 SLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
                    + + D EPGRCRRTDGKKWRC+++ V++ KYCEKH++RGR RSRK VE
Sbjct: 102 --------KNIAGDLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150


>AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR
           6); transcription activator | chr2:2426340-2427255
           FORWARD
          Length = 244

 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 8/129 (6%)

Query: 109 GVTVAFTASQRMELKQQALIYKYISASVPVPDNLLIPLKSN-LRPHPYGLSAPSAGFFPS 167
              + FT SQ  EL+ QAL++KY++A++PVP +LL  +K   L       S+ S+ F P+
Sbjct: 2   ATRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPT 61

Query: 168 NS--LGWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYR- 224
            S   GW+   +G MG     D+EPGRCRRTDGKKWRCS++   D KYCE+HM+RG+ R 
Sbjct: 62  LSPHFGWNVYEMG-MGRKI--DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS 118

Query: 225 -SRKPVEAQ 232
            SRKP   Q
Sbjct: 119 SSRKPPPTQ 127


>AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR
           8); transcription activator | chr4:12535972-12539387
           FORWARD
          Length = 493

 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 20/140 (14%)

Query: 112 VAFTASQRMELKQQALIYKYISASVPVPDNLLIPL----KSNLRP----HPYGLSAPSAG 163
            AF+ +Q  EL++Q  IYKY+ ASVPVP  LL P     +SN  P    +  G+ +  A 
Sbjct: 148 AAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYAD 207

Query: 164 FFPSNSLGW----------SSLRLGYMGSST--SRDSEPGRCRRTDGKKWRCSRDTVADQ 211
           +       W           SL+LG   S++  + D EP RC+RTDGKKWRCSR+ + DQ
Sbjct: 208 YKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQ 267

Query: 212 KYCEKHMNRGRYRSRKPVEA 231
           KYCE+H ++ R RSRK VE+
Sbjct: 268 KYCERHTHKSRPRSRKHVES 287


>AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR
           9); transcription activator | chr2:18745583-18747403
           FORWARD
          Length = 429

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 9/112 (8%)

Query: 116 ASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWSSL 175
           A+Q ME + QAL+Y+YI A + VP +L++P+ ++L           +    SN  G + +
Sbjct: 25  AAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNK-GVTHI 83

Query: 176 RLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRK 227
                    + ++EP RCRRTDGKKWRCS   +  +KYCE+HM+RGR RSRK
Sbjct: 84  --------DTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127



 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 187 DSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEA 231
           D+EPGRCRRTDGKKWRCS+D ++ QKYC+KHM+RG  + + PV+ 
Sbjct: 305 DNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRG-MKKKHPVDT 348