Jatropha Genome Database
- JcCB0096311.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0096311.10 + phase: 0
(301 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77250.1 | Symbols: | PHD finger family protein | chr1:29020... 246 2e-65
AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA binding / methyl... 70 2e-12
AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP... 55 6e-08
AT5G24330.1 | Symbols: ATXR6, SDG34 | ATXR6; DNA binding / prote... 53 2e-07
AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED HOMEODO... 52 5e-07
AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITIO... 50 2e-06
AT1G79350.1 | Symbols: EMB1135 | EMB1135 (embryo defective 1135)... 49 5e-06
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF ... 48 6e-06
>AT1G77250.1 | Symbols: | PHD finger family protein |
chr1:29020444-29022938 REVERSE
Length = 522
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 176/277 (63%), Gaps = 5/277 (1%)
Query: 21 CRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTAVGMGSPHENCVVC 80
C+ CG KA+ RDCL CD CE+MYHVSC QP K +P SWYC CT+ G+GSPHENCVVC
Sbjct: 243 CKLCGEKAEARDCLACDHCEDMYHVSCAQPGGKGMPTHSWYCLDCTSKGIGSPHENCVVC 302
Query: 81 KRLNAPRALCNDTDDEMKYATIERTFSKFEETSNCSRDDFRQPPVGNKSSCVCKICGSEV 140
+++ + D + ++ EE S+C+ + ++ S +C+ CG++V
Sbjct: 303 EKMKTQGMMKTDNRSVDTSTECKEDSNESEENSSCNMNHEVHHVEMSRDSELCRTCGTKV 362
Query: 141 ENGEKVKICEHNGCPYKYYHVRCLTTNLLKSYGPRWYCSSCLCRVCLLDRDDHQIVLCDG 200
++G K C+H CP+KYYH+RCLT+ +K +G RWYCSSCLCR CL D+DD +IVLCDG
Sbjct: 363 DSGGKYITCDHPFCPHKYYHIRCLTSRQIKLHGVRWYCSSCLCRNCLTDKDDDKIVLCDG 422
Query: 201 CDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKEIRRVKKAYEKQGNRMKRKDEMGRSACE 260
CD A+H+YC+ PP SVP G+WFC C I ++++ +KA+EK+ ++++ + +
Sbjct: 423 CDDAYHIYCMRPPCESVPNGEWFCTACKAAILKVQKARKAFEKKMETVQKQKGI---KPK 479
Query: 261 NLGKKLDVNCDQESDKDREPMEMLVKAA--LNFEEKM 295
NL K + E D+ M+ML+ AA L EE+M
Sbjct: 480 NLQGKPQSKDNGELDQSVGGMDMLLNAADTLKDEEQM 516
>AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA binding / methyl-CpG
binding | chr3:173316-182038 FORWARD
Length = 2176
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 174 PRWYCSSCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKE 233
P+ +C+VC +D+DD ++LCD CD +H YCLNPP +P G W+C C + +
Sbjct: 1281 PKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAKRM 1340
Query: 234 IRRVKKAYEKQGNRMKRK--DEMGRSACENLGKKLDV 268
+ ++Y+ R RK E+ R++ E DV
Sbjct: 1341 AQEALESYKLVRRRKGRKYQGELTRASMELTAHLADV 1377
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 20 TCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCT 66
C+ CG D L+CD+C+ YH C+ P + IP +WYC SC
Sbjct: 1289 VCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCV 1335
>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/
nucleic acid binding / protein binding / zinc ion
binding | chr5:18083659-18092162 REVERSE
Length = 2242
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVK---IKEIRRVKK 239
C +C L D ++ CD C +H CLNPP +P GKW C +C +K + R+
Sbjct: 78 CVICDLGGD---LLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPNSEALKPVNRLDA 134
Query: 240 AYEKQGNRMKRKDEMGRSACE 260
++ + K+++ CE
Sbjct: 135 IAKRARTKTKKRNSKAGPKCE 155
>AT5G24330.1 | Symbols: ATXR6, SDG34 | ATXR6; DNA binding / protein
binding | chr5:8295245-8296997 REVERSE
Length = 349
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 181 CLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
+C C + +++LCD CD FHL+CL P SVP+G WFC C
Sbjct: 33 TVCEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 79
>AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED
HOMEODOMAIN PROTEIN A); protein binding /
sequence-specific DNA binding / transcription activator/
transcription factor | chr4:14648346-14652710 REVERSE
Length = 796
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 177 YCSSCLCRVCLLDRDDHQIVLCDG-CDHAFHLYCLNPP--RTSVPRGK--WFCRQCDVKI 231
+C+ C R D D I+LCDG C+ AFH CL+PP S+P G WFC+ CD KI
Sbjct: 192 FCAECNSREAFPDND---IILCDGTCNRAFHQKCLDPPLETESIPPGDQGWFCKFCDCKI 248
Query: 232 KEI 234
+ I
Sbjct: 249 EII 251
>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITION
COMPLEX 1); DNA binding / double-stranded methylated DNA
binding | chr4:8422236-8424665 FORWARD
Length = 809
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVK 230
C++C + ++ CD C FHL CL PP VP G W C+ C+VK
Sbjct: 166 CQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEGDWICQFCEVK 213
>AT1G79350.1 | Symbols: EMB1135 | EMB1135 (embryo defective 1135);
DNA binding / protein binding / zinc ion binding |
chr1:29844829-29853215 REVERSE
Length = 1299
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 17 QFCTCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASC 65
+F C+ C G+ + + L C C++++H C+ P V ++P ++W C SC
Sbjct: 700 EFQICQICSGEDERKKLLHCSECDKLFHPDCVVPPVIDLPSEAWICFSC 748
>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF
REPLICATION COMPLEX 1B); DNA binding / double-stranded
methylated DNA binding / protein binding |
chr4:7459812-7462253 REVERSE
Length = 813
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVK 230
C++C D + ++ CD C FHL CL PP VP G W C+ C+VK
Sbjct: 169 CQICF-KSDTNIMIECDDCLGGFHLKCLKPPLKEVPEGDWICQFCEVK 215