Jatropha Genome Database

JcCB0095581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095581.10 + phase: 1 /partial
         (172 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20050.1 | Symbols: HYD1 | HYD1 (HYDRA1); C-8 sterol isomeras...   223   4e-59

>AT1G20050.1 | Symbols: HYD1 | HYD1 (HYDRA1); C-8 sterol isomerase |
           chr1:6949160-6950135 FORWARD
          Length = 223

 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 128/174 (73%), Gaps = 7/174 (4%)

Query: 4   KTAKIDRILMCWWAFTGLTHVILEGYFAFSPEFYKEKTPFYLAEVWKEYSKGDSRYAARD 63
           K AK+D++LMCWW FTGLTHVILEGYF FSPEF+K+ T  YLAEVWKEYSKGDSRY  RD
Sbjct: 50  KKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRD 109

Query: 64  AGIVSVEGLTAVLEGPASLLAVYAIATKKSYSYILQFAISLGQLYGTAVYFITAFLEGDN 123
           + +VSVEG+TAV+ GPASLLA+YAIA +KSYSY+LQ AIS+ QLYG  VYFITA LEGDN
Sbjct: 110 SAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGDN 169

Query: 124 FXXXXXXXXXXXXXXXXSWVVIPSIISIRCWKKIC-------AAFEAQGQKKTK 170
           F                 WV+IPS+IS RCWKKIC          E + +KKT+
Sbjct: 170 FATNSFYYYSYYIGANCWWVLIPSLISFRCWKKICAAAAIANNNVETKTKKKTR 223