Jatropha Genome Database

JcCB0095561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095561.20 - phase: 2 /TE
         (241 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    79   2e-15
AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...    66   2e-11
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    58   6e-09

>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 10/247 (4%)

Query: 3   IVGDGSTIRI*KDKWLADTNQHRILSRPTISNENATMSHLILQNPKQ--WNVDLISAIFA 60
           ++GDG  IRI  D  + D++  R L+      E  T+++L  +      W+   IS    
Sbjct: 41  LIGDGQNIRIGLDN-IVDSHPPRPLNTEETYKE-MTINNLFERKGSYYFWDDSKISQFVD 98

Query: 61  REEMRKILFISLGLRRNSDVRI*PLSKHGKYIVRSGYGLLHEDSLSQSYASSFVPVSTAW 120
           + +   I  I L   +  D  I   +  G+Y VRSGY LL  D  +   A +    S   
Sbjct: 99  QSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDL 158

Query: 121 K-QLWQQNILPKVKHFVHRACKNHLPAADSLVQRGMLIDVVGEVCGLRIERVIHALKGCI 179
           K ++W   I+PK+KHF+ RA    L   + L  RGM ID     C    E + HAL  C 
Sbjct: 159 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP 218

Query: 180 LGEQVWKYSHLRLTTSKCQALSFMEWFATIISKFQKEQIELF-----LMTAWAIWHAQNL 234
                W+ S   L  ++  +  F E  + I++  Q   +  F     +   W IW A+N 
Sbjct: 219 FATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNN 278

Query: 235 LKFEHKR 241
           + F   R
Sbjct: 279 VVFNKFR 285


>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 9/197 (4%)

Query: 3   IVGDGSTIRI*KDKWLADTNQHRILSRPTISNENAT-------MSHLILQNPKQWNVDLI 55
           +VG+G  I I + KWL        L    +  +          +S LI ++ ++W  D+I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187

Query: 56  SAIFAREEMRKILFISLGLRRNSDVRI*PLSKHGKYIVRSGYGLLHE--DSLSQSYASSF 113
             +F   E + I  +  G RR  D      +  G Y V+SGY +L +  +  S     S 
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247

Query: 114 VPVSTAWKQLWQQNILPKVKHFVHRACKNHLPAADSLVQRGMLIDVVGEVCGLRIERVIH 173
             ++  ++++W+    PK++HF+ +   N LP A +L  R +  +     C    E V H
Sbjct: 248 PSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNH 307

Query: 174 ALKGCILGEQVWKYSHL 190
            L  C      W  S +
Sbjct: 308 LLFKCTFARLTWAISSI 324


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 90  KYIVRSGYGLLHEDSLSQSYASSFVPVSTAWKQ-LWQQNILPKVKHFVHRACKNHLPAAD 148
           K I+RSGY +   + L +  A    P ST  KQ +W+ ++ PK+KHF+ R     L    
Sbjct: 3   KRILRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNT 62

Query: 149 SLVQRGMLIDVVGEVCGLRIERVIHALKGCILGEQVWKYSHLRLTTSKCQALSFMEWFAT 208
            L  R +  D + + C +  E + H +  C   + VW+ +++ +        SF +    
Sbjct: 63  RLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNR 122

Query: 209 II--SKFQ-KEQIELFLM--TAWAIWHAQNLLKFEHK 240
           +I  SK Q    ++ FL     W +W ++N+  F+ K
Sbjct: 123 LIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQK 159