Jatropha Genome Database

JcCB0095251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095251.10 - phase: 2 /partial
         (668 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3...   556   e-158

>AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1
           | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A);
           translation initiation factor | chr4:6947834-6952053
           REVERSE
          Length = 987

 Score =  556 bits (1432), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/456 (63%), Positives = 359/456 (78%), Gaps = 1/456 (0%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNL+PK E ++ LSR +LLSEL+SKGVLSCA+QEVKDL+H+LE+
Sbjct: 344 LENEKERNLRMANLIGFNLEPKFEGKDMLSRSALLSELVSKGVLSCASQEVKDLFHVLEH 403

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           EF PLDL +K+QPLL KISK GGK++SA S+PEVQLSQYVP+LEKLATLRLLQQVS++YQ
Sbjct: 404 EFHPLDLGSKIQPLLEKISKSGGKLSSAPSLPEVQLSQYVPSLEKLATLRLLQQVSKIYQ 463

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            ++IESLSQ++PF  FS VEKISVDAVK+NF+AMKV+H KGV++F NLG+ESDGLRDHLA
Sbjct: 464 TIRIESLSQLVPFFQFSEVEKISVDAVKNNFVAMKVDHMKGVVIFGNLGIESDGLRDHLA 523

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXX 243
           +FAESL+KVRA++YP   K+SKL  ++P L + V+KEHKRLLARKSII            
Sbjct: 524 VFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQL 583

Query: 244 XXXXXXXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRS 303
                            EEAEQKRLAAE+ +R+                     + +K  
Sbjct: 584 EMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEK-R 642

Query: 304 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 363
            +KG KKP+L+GEKVTKQ++ ERAL+EQL+ERQEMEKKLQKLAKTMDYLERAKREEAAPL
Sbjct: 643 MKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPL 702

Query: 364 IEAAFQRRLVEEKALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQ 423
           IEAA+QRRLVEE+   E EQQ E+ELS++RH+ DL+EKNRLSRML NK IFQ +V+SRRQ
Sbjct: 703 IEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQ 762

Query: 424 AEFDRLRTEREERINQIIQARKQEREANRKKIFYVR 459
           AEFDR+RTEREERI++II+ +KQER+  RK+I+Y++
Sbjct: 763 AEFDRIRTEREERISKIIREKKQERDIKRKQIYYLK 798



 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 571 YVPRFRRDR-ESTGQAPPDSEKWGGGSSRQAPSEPERWSGGVRQPPSDSERWGSGSSRQA 629
           YVP+++R   E +G + P S +    S+R  P   + W G  R    +++RW S   R  
Sbjct: 896 YVPKWKRQTTEVSGPSAPTSSETDRRSNRGPPPGDDHW-GSNRGAAQNTDRWTSNRERSG 954

Query: 630 PPSDS-DRWGSGPRPED 645
           PP++  DRWGSGPR  D
Sbjct: 955 PPAEGGDRWGSGPRGSD 971