Jatropha Genome Database

JcCB0094891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094891.10 - phase: 0 /pseudo
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19970.1 | Symbols:  | unknown protein | chr3:6959644-6961367...    90   6e-19

>AT3G19970.1 | Symbols:  | unknown protein | chr3:6959644-6961367
           FORWARD
          Length = 434

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 68/126 (53%)

Query: 1   MGSLSGIIQRPIXXXXXXXXXXXXTDLSEKLPSVKSVDTCSGSLQSHSPLSDPVQEPSFS 60
           MGSLSGIIQRP+             D+SE+  S++S+   S S Q    +S  VQE    
Sbjct: 1   MGSLSGIIQRPLVAAAAVITASVSADVSERFSSLRSLVRGSESEQIAPSVSGLVQEERSL 60

Query: 61  WVSHISVSRLTKLSFVNRIHVPVPSTNFLVPNSIHKYVPSTLASPLLLHSYQSAELAKGP 120
           WVS +S S+L  LSFV+RI VPVP+ + L  N       S  +   L   YQSAELAK  
Sbjct: 61  WVSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLATSVTSLSALRSVYQSAELAKAS 120

Query: 121 KPTALT 126
           KP A T
Sbjct: 121 KPVAFT 126