Jatropha Genome Database

JcCB0093811.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0093811.10 - phase: 0 
         (442 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06570.1 | Symbols: PDS1, HPD | PDS1 (PHYTOENE DESATURATION 1...   655   0.0  
AT1G06570.2 | Symbols: PDS1, HPD | PDS1 (PHYTOENE DESATURATION 1...   581   e-166

>AT1G06570.1 | Symbols: PDS1, HPD | PDS1 (PHYTOENE DESATURATION 1);
           4-hydroxyphenylpyruvate dioxygenase |
           chr1:2012015-2013543 REVERSE
          Length = 473

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/446 (70%), Positives = 363/446 (81%), Gaps = 11/446 (2%)

Query: 1   MGKQDDTVA--------SAAAEGFQLVGFSNFVRTNPRSDRFKVKRFHHVEFWCTDATNT 52
           MG Q+  V+        +A++ GF+LVGFS FVR NP+SD+FKVKRFHH+EFWC DATN 
Sbjct: 29  MGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNV 88

Query: 53  ARRFSWGLGMPIVVKSDISTGNVTHASYLLRSGDLNFLFTAPYSPSIAAMENLSNTATAS 112
           ARRFSWGLGM    KSD+STGN+ HASYLL SGDL FLFTAPYSPS++A E +  T TAS
Sbjct: 89  ARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGE-IKPTTTAS 147

Query: 113 IPTFNHEDCRNFTAKHGLAVRAIALEVEDAVIAFNTSVAHGAQPSAEPIALDNRAVVAEV 172
           IP+F+H  CR+F + HGL VRA+A+EVEDA  AF+ SVA+GA PS+ PI L+    +AEV
Sbjct: 148 IPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEV 207

Query: 173 HLYGDVVLRYISYYNSNPNDDHDWFLPKFEAMDESSSFSLDYGIRRLDHAVGNVPELAPA 232
            LYGDVVLRY+SY     + +   FLP FE ++++SSF LDYGIRRLDHAVGNVPEL PA
Sbjct: 208 KLYGDVVLRYVSY--KAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPA 265

Query: 233 VSYVKAFTGFHEFAEFTAEDVGTNESGLNSVVLANNEETVLLPLNEPVFGTKRKSQIQTY 292
           ++YV  FTGFH+FAEFTA+DVGT ESGLNS VLA+N+E VLLP+NEPV GTKRKSQIQTY
Sbjct: 266 LTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTY 325

Query: 293 LEHNEGAGVQHLALASENIFRTLREMRKRSCIGGFEFMPSPPPTYYKNLKNRVGDVLTDD 352
           LEHNEGAG+QHLAL SE+IFRTLREMRKRS IGGF+FMPSPPPTYY+NLK RVGDVL+DD
Sbjct: 326 LEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDD 385

Query: 353 QIKECEELGILVDRDDHGTLLQIFTKPLGDRPTIFIEIIQRVGCMLKDEAXXXXXXXXXX 412
           QIKECEELGILVDRDD GTLLQIFTKPLGDRPTIFIEIIQRVGCM+KDE           
Sbjct: 386 QIKECEELGILVDRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCG 445

Query: 413 XXXXXNFSELFKSIEEYEKTLEAKRI 438
                NFSELFKSIEEYEKTLEAK++
Sbjct: 446 GFGKGNFSELFKSIEEYEKTLEAKQL 471


>AT1G06570.2 | Symbols: PDS1, HPD | PDS1 (PHYTOENE DESATURATION 1);
           4-hydroxyphenylpyruvate dioxygenase |
           chr1:2012173-2013543 REVERSE
          Length = 418

 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/391 (71%), Positives = 323/391 (82%), Gaps = 11/391 (2%)

Query: 1   MGKQDDTVA--------SAAAEGFQLVGFSNFVRTNPRSDRFKVKRFHHVEFWCTDATNT 52
           MG Q+  V+        +A++ GF+LVGFS FVR NP+SD+FKVKRFHH+EFWC DATN 
Sbjct: 29  MGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNV 88

Query: 53  ARRFSWGLGMPIVVKSDISTGNVTHASYLLRSGDLNFLFTAPYSPSIAAMENLSNTATAS 112
           ARRFSWGLGM    KSD+STGN+ HASYLL SGDL FLFTAPYSPS++A E +  T TAS
Sbjct: 89  ARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGE-IKPTTTAS 147

Query: 113 IPTFNHEDCRNFTAKHGLAVRAIALEVEDAVIAFNTSVAHGAQPSAEPIALDNRAVVAEV 172
           IP+F+H  CR+F + HGL VRA+A+EVEDA  AF+ SVA+GA PS+ PI L+    +AEV
Sbjct: 148 IPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEV 207

Query: 173 HLYGDVVLRYISYYNSNPNDDHDWFLPKFEAMDESSSFSLDYGIRRLDHAVGNVPELAPA 232
            LYGDVVLRY+SY     + +   FLP FE ++++SSF LDYGIRRLDHAVGNVPEL PA
Sbjct: 208 KLYGDVVLRYVSY--KAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPA 265

Query: 233 VSYVKAFTGFHEFAEFTAEDVGTNESGLNSVVLANNEETVLLPLNEPVFGTKRKSQIQTY 292
           ++YV  FTGFH+FAEFTA+DVGT ESGLNS VLA+N+E VLLP+NEPV GTKRKSQIQTY
Sbjct: 266 LTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTY 325

Query: 293 LEHNEGAGVQHLALASENIFRTLREMRKRSCIGGFEFMPSPPPTYYKNLKNRVGDVLTDD 352
           LEHNEGAG+QHLAL SE+IFRTLREMRKRS IGGF+FMPSPPPTYY+NLK RVGDVL+DD
Sbjct: 326 LEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDD 385

Query: 353 QIKECEELGILVDRDDHGTLLQIFTKPLGDR 383
           QIKECEELGILVDRDD GTLLQIFTKPLG R
Sbjct: 386 QIKECEELGILVDRDDQGTLLQIFTKPLGRR 416