Jatropha Genome Database

JcCB0089711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.20 - phase: 0 /TE
         (278 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    55   4e-08
AT1G48720.1 | Symbols:  | unknown protein | chr1:18018148-180184...    49   5e-06

>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 24/240 (10%)

Query: 18  NYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPS-NPTMV------QIKNHSEEKAKKFKA 70
           +Y++W    K+ L    LW+ V     +P  PS NP +       ++    +   K  KA
Sbjct: 16  DYEIWAPITKSTLIEQGLWDVVVNG--VPQDPSKNPELAATIQPEELSKWRDFVVKDAKA 73

Query: 71  KTCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKL-----MQVLNLKREFEM*K 125
              L SS++D +F   ++   AK++WD L+   +GNEQ  +     + +  L+++ E  K
Sbjct: 74  LQILQSSLTDSVFRKTLSASSAKDVWDLLR---KGNEQATIRRLEQVTIRRLEKQLEDLK 130

Query: 126 MRTSGGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFE 185
           M        Y++  +  + ++     E  +  + + +  +L   F+   S LE+  ++ +
Sbjct: 131 MVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHK 190

Query: 186 IFVGELTNALQAVEQRRAFKEDNTIEVALVAKTTNKCLSKRIKFPPCGICKKDNHDENDC 245
           +    L              E +T E         +  SK  K+  CG+C K+NH++ DC
Sbjct: 191 MTSKSLVEYFYY-----RVHESSTEEAIFGLLKDLRLKSKSEKW--CGLCYKNNHNQEDC 243


>AT1G48720.1 | Symbols:  | unknown protein |
          chr1:18018148-18018441 FORWARD
          Length = 97

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 1  MATNTIPFSSPPIFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNH 60
          MA+N +PF  P +    NY  W+++MKA L A+D+WE VE     P    + +  Q    
Sbjct: 1  MASNNVPFQVP-VLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 59

Query: 61 SEEKAKKFKAKTCLHSSISDIIFTSIMTCEIAKE 94
           + + +  KA   ++  + +  F  ++    AK+
Sbjct: 60 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKD 93