Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.10 + phase: 0 
         (69 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50460.1 | Symbols:  | protein transport protein SEC61 gamma ...   100   2e-22
AT4G24920.1 | Symbols:  | protein transport protein SEC61 gamma ...   100   2e-22
AT3G48570.1 | Symbols:  | protein transport protein SEC61 gamma ...    97   2e-21

>AT5G50460.1 | Symbols:  | protein transport protein SEC61 gamma
          subunit, putative | chr5:20552168-20552509 REVERSE
          Length = 69

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSV DPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVG++
Sbjct: 61 INNIIVGAT 69


>AT4G24920.1 | Symbols:  | protein transport protein SEC61 gamma
          subunit, putative | chr4:12820257-12820665 REVERSE
          Length = 69

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSV DPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVG++
Sbjct: 61 INNIIVGAT 69


>AT3G48570.1 | Symbols:  | protein transport protein SEC61 gamma
          subunit, putative | chr3:18004604-18004912 REVERSE
          Length = 69

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 53/69 (76%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          M+A+DS  DPLR+FAK SVRLV+RCHKPDRKEFTKVA RTAI            KL+FIP
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGSS
Sbjct: 61 INNIIVGSS 69