Jatropha Genome Database

JcCB0088661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0088661.10 + phase: 0 /partial
         (771 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   315   7e-86

>AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
            INVOLVED IN: biological_process unknown; LOCATED IN:
            cellular_component unknown; EXPRESSED IN: 22 plant
            structures; EXPRESSED DURING: 13 growth stages; CONTAINS
            InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057);
            Has 1675 Blast hits to 1424 proteins in 225 species:
            Archae - 2; Bacteria - 192; Metazoa - 559; Fungi - 257;
            Plants - 67; Viruses - 46; Other Eukaryotes - 552
            (source: NCBI BLink). | chr1:23978868-23983925 FORWARD
          Length = 1239

 Score =  315 bits (807), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 261/786 (33%), Positives = 369/786 (46%), Gaps = 121/786 (15%)

Query: 1    IFVRQKNRCSSKAPENPIKAVRWMKTSPLNAEEIECIQEGLKVFKHDWMSVWRFIVPHRD 60
            I+VRQKNR SSKAPENPIKAV  MK+SPL  +EI  IQEGLK FK+DW SVW+F+VP+RD
Sbjct: 539  IYVRQKNRRSSKAPENPIKAVLRMKSSPLTPQEILRIQEGLKYFKYDWTSVWKFVVPYRD 598

Query: 61   PSLLPRQWRMALGTQRSYKSDAAKKEKRRIYESNRRRSKTADLANSQQDNQVDITGGENN 120
            PSLLPRQWR ALG Q+SYK DA KKEKRR+Y++NR+  +    A++++D        E +
Sbjct: 599  PSLLPRQWRTALGIQKSYKLDAVKKEKRRLYDTNRKFREQQ--ASAKEDRYGASKANEYH 656

Query: 121  SGDDCVDNVNEAYVHQAFLADWRPDACFNLREKNLPSGAVLREGTRVREHSQIDNVHKFP 180
             G + V++  EAY+H+ FLADWRP          +P+       +    HS  D     P
Sbjct: 657  VGGELVESSGEAYLHEGFLADWRP---------GMPTFF-----SSAPMHS-FDKAKDVP 701

Query: 181  NARYYQYPHAV------------SYFAHARHCPPNSMQLNHQLSNTTLNATKSQIYMWPY 228
              R+      +                  +   P+ + +    S T   A+K+ I   PY
Sbjct: 702  GDRHESVQTCIVEGSKNPELCGAQILTCTQRLAPSFIPMYRHTSGTAPGASKAPIIARPY 761

Query: 229  RTHRTDGAHLVKLAPDLPPVNLPPSVRVISQAAFKSNQCRLPMKI-PTSGGSGVEAGRER 287
            R+ +     +V+LAPDLPPVNLP SVRVISQ+ F  NQ     K    +GG    +GR  
Sbjct: 762  RSRKVFNRSVVRLAPDLPPVNLPSSVRVISQSVFAKNQSETSSKTCIINGGMSDVSGRGN 821

Query: 288  ENIVPQLLQVVNSRATSLAKAKRDKTNQVTDNITNACSEELTATCAEESAVQNDVCVAEE 347
              I            T    A RD     ++ + +     L      ES+   D     +
Sbjct: 822  FGI-----------ETPCFSADRDNNGPPSEKVVD-----LQEDVPAESSSGMD-----K 860

Query: 348  RGNDSDLQMHPLLFQAPEDGCLSYYPPSCSTATPSSFAFFAGNQPQLNLSLFHAPHQANQ 407
            + NDSDLQMHPLLF+ PE G ++ YP +      SSF+FF+ N+PQL LSLF++P Q N 
Sbjct: 861  QSNDSDLQMHPLLFRTPEHGQITCYPANRDPGG-SSFSFFSENRPQL-LSLFNSPKQINH 918

Query: 408  ISDCLNKSSKTKESISASCGIDFHPLLQRTGEESSELATACSNTHQFVCLGGKSAQFQNP 467
             +D L+++S + E  +A   I FHPLLQRT  E+S + +   N    +    K  Q Q+ 
Sbjct: 919  SADQLHRNSSSNEYETAQGDICFHPLLQRTEYETSYVISRRGNLDPDIGKKDKLCQLQDT 978

Query: 468  SDVVQ-TKLPVNSPSATASKPSGPNEKSNELDLEIHLXXXXXXXXXXGTRDSASNYQPKL 526
            S  V+ T +PV   +  + +P   +     ++L+I+L          G+  +A+      
Sbjct: 979  SGAVEKTAIPVTGRNDVSLEPFSSSTPGKNVNLDIYLSTSSSKVNNGGSVSAAN------ 1032

Query: 527  MISAPNPVNTIEKHKPNNPCHQHGENCSTVQSNLVSCGDALAVPSNSDRICNMDDVGDQS 586
            +  AP            + C     + S V  +        A PS++   C ++++ DQS
Sbjct: 1033 ISEAP------------DICMAQLNDGSEVPGS--------APPSDNISRC-IEEMADQS 1071

Query: 587  HPEIIMXXXXXXXX--XXXXXXXXXXXXXXMADSDXXXXXXXXXXXXXPDKEITCSATEE 644
            +  I+M                        MADS+              DK+   S  E 
Sbjct: 1072 NLGIVMEQEELSDSDDEMMEEEHVEFECEEMADSEGEEGSECEENIEMQDKDNRNSVVEI 1131

Query: 645  VTTEWKSTIHTDGNSSIPGKASPFLKLSLTSMRKESSSSAWLTLD------SCAAVDPPR 698
             +T+  S           GK           + K+S +S WL+LD      S    D  +
Sbjct: 1132 TSTDVDS-----------GK----------ELGKDSPNSPWLSLDPSSRRLSSNVKDREK 1170

Query: 699  INAKYEECTIGACPVAKKLISGRPNRSCKKTTQSMRTVVTEKDVMDMAQQLSLGPLAVST 758
            I A   E TI             P+RS KK T         K+   +A +L LGPLA+  
Sbjct: 1171 IEAT-NETTISQF---------GPSRSRKKGTPVKSRDAESKEEAGVA-RLRLGPLALPP 1219

Query: 759  LKKPRK 764
            +KKPRK
Sbjct: 1220 MKKPRK 1225