Jatropha Genome Database

JcCB0088201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0088201.10 + phase: 1 /TE/partial
         (578 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   190   2e-48
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    90   5e-18

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 138/226 (61%), Gaps = 23/226 (10%)

Query: 28  RQRRPAISSDYVVYSLK----HECE--LSIDKDPVSFQKAMECDNSEK------------ 69
           R R+PA   DY  +S+     H+    LS +K    +   + C    K            
Sbjct: 37  RTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFL 96

Query: 70  -WFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYT 128
            W  A+ +E+ +M  +  W++  LP + K +GCKWV+K K +S G IERYKARLVAKGYT
Sbjct: 97  VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYT 156

Query: 129 QKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVKTAFLNGDLEEEVYMDQPEGF 188
           Q++ ID+ ETFSPV K  S+++ILA+   Y+  LHQ+D+  AFLNGDL+EE+YM  P G+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 189 ATTGKQSL----VCKLKKSIYRLKQASCQWYLKFNNTITSYGFMKT 230
           A     SL    VC LKKSIY LKQAS QW+LKF+ T+  +GF+++
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
           L Y     +++  +SD+++  C D+R+ST GY   L    +SWKS KQ V++ S+ EA++
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
            A   AT   +WL  F   L +   +++P  ++CDN  A+  + N  + +  K ++    
Sbjct: 492 RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 549

Query: 528 SVKE 531
           SV+E
Sbjct: 550 SVRE 553


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 3/111 (2%)

Query: 50  SIDKDPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKR 109
           +I K+P S   A++      W  A++EE+ ++S ++ W LV  P +   +GCKWVFKTK 
Sbjct: 23  TIKKEPKSVIFALK---DPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKL 79

Query: 110 DSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDL 160
            S G ++R KARLVAKG+ Q++ I + ET+SPV +  ++R IL +    ++
Sbjct: 80  HSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130