Jatropha Genome Database

JcCB0087221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.10 - phase: 0 
         (118 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12410.1 | Symbols:  | THUMP domain-containing protein | chr5...    96   3e-21

>AT5G12410.1 | Symbols:  | THUMP domain-containing protein |
          chr5:4021974-4023950 REVERSE
          Length = 376

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 49/57 (85%)

Query: 13 ANVNKGKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQASHEAINVIDS 69
          A+ ++ KKRKQ Y P N+PVKKKG+YPL PGVQGFFI+CDGGRE QA+ EAINVIDS
Sbjct: 2  ASGDQSKKRKQHYRPQNRPVKKKGSYPLKPGVQGFFISCDGGREFQAAQEAINVIDS 58