Jatropha Genome Database

JcCB0086551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086551.10 - phase: 0 /partial
         (349 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32295.1 | Symbols:  | unknown protein | chr4:15592960-155940...   254   5e-68
AT3G24150.1 | Symbols:  | unknown protein | chr3:8724273-8725586...   230   1e-60
AT4G32295.2 | Symbols:  | unknown protein | chr4:15593259-155940...   135   3e-32

>AT4G32295.1 | Symbols:  | unknown protein | chr4:15592960-15594080
           FORWARD
          Length = 238

 Score =  254 bits (650), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 127/135 (94%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPY+C+RRAWHSDRHQP+RG LIQEIFR+V E+HS +T+KN EWQEKLPVVVLR
Sbjct: 1   MPRPGPRPYDCIRRAWHSDRHQPMRGLLIQEIFRIVCEIHSQSTRKNTEWQEKLPVVVLR 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSEAEYMD+KTL DRTNDAINTIIR DE+TETGE LQPCIEAAL+LGCTPR
Sbjct: 61  AEEIMYSKANSEAEYMDMKTLLDRTNDAINTIIRLDETTETGEFLQPCIEAALHLGCTPR 120

Query: 121 RASRSQRNCNPRCYL 135
           RASRSQRN NPRCYL
Sbjct: 121 RASRSQRNINPRCYL 135


>AT3G24150.1 | Symbols:  | unknown protein | chr3:8724273-8725586
           REVERSE
          Length = 343

 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 119/135 (88%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECV+RAWHSDRHQPIRGS+I++IFR+  E HS+AT+KNKEWQEKLPVVVL+
Sbjct: 1   MPRPGPRPYECVKRAWHSDRHQPIRGSIIRQIFRLAMEAHSAATRKNKEWQEKLPVVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSE EY D  T+W+R NDAI+TIIRRDESTETG LL PC+EAALNLGC   
Sbjct: 61  AEEIMYSKANSEEEYTDADTMWNRVNDAIDTIIRRDESTETGPLLPPCVEAALNLGCIAV 120

Query: 121 RASRSQRNCNPRCYL 135
           RASRSQR+ + R YL
Sbjct: 121 RASRSQRHSSGRTYL 135


>AT4G32295.2 | Symbols:  | unknown protein | chr4:15593259-15594080
           FORWARD
          Length = 174

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 67/71 (94%)

Query: 65  MYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPRRASR 124
           MYSKANSEAEYMD+KTL DRTNDAINTIIR DE+TETGE LQPCIEAAL+LGCTPRRASR
Sbjct: 1   MYSKANSEAEYMDMKTLLDRTNDAINTIIRLDETTETGEFLQPCIEAALHLGCTPRRASR 60

Query: 125 SQRNCNPRCYL 135
           SQRN NPRCYL
Sbjct: 61  SQRNINPRCYL 71