Jatropha Genome Database

JcCB0086351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086351.10 - phase: 2 /pseudo/partial
         (72 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);...    82   1e-16

>AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);
           ATP binding / DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr5:7280632-7287037 REVERSE
          Length = 956

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/42 (88%), Positives = 40/42 (95%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           + +N LQYMSLSMSVIKYDD+RQRLLSSAKDEDISPFTAVDK
Sbjct: 567 LAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDK 608