Jatropha Genome Database

JcCB0085591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085591.10 - phase: 0 /partial
         (183 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44560.1 | Symbols: VPS2.2 | VPS2.2 | chr5:17946081-17948222 ...   243   4e-65
AT5G44560.2 | Symbols: VPS2.2 | VPS2.2 | chr5:17946516-17948222 ...   243   5e-65
AT1G03950.1 | Symbols: VPS2.3 | VPS2.3 (VACUOLAR PROTEIN SORTING...   209   7e-55
AT2G06530.1 | Symbols: VPS2.1 | VPS2.1 | chr2:2588740-2590285 RE...   105   2e-23

>AT5G44560.1 | Symbols: VPS2.2 | VPS2.2 | chr5:17946081-17948222
           FORWARD
          Length = 222

 Score =  243 bits (621), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 130/148 (87%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EK+LVAEIK+TAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSI
Sbjct: 39  EKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSI 98

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           S+GMKGATKAMVAMNKQMAPTKQAKVIK+FQKQSAQ+DMTIEMMSE+I            
Sbjct: 99  SSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEE 158

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQL 176
                NQVLDEIGVG+ASQLSSAPKG++
Sbjct: 159 TEDLTNQVLDEIGVGVASQLSSAPKGRI 186


>AT5G44560.2 | Symbols: VPS2.2 | VPS2.2 | chr5:17946516-17948222
           FORWARD
          Length = 202

 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 130/148 (87%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EK+LVAEIK+TAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSI
Sbjct: 19  EKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSI 78

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           S+GMKGATKAMVAMNKQMAPTKQAKVIK+FQKQSAQ+DMTIEMMSE+I            
Sbjct: 79  SSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEE 138

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQL 176
                NQVLDEIGVG+ASQLSSAPKG++
Sbjct: 139 TEDLTNQVLDEIGVGVASQLSSAPKGRI 166


>AT1G03950.1 | Symbols: VPS2.3 | VPS2.3 (VACUOLAR PROTEIN
           SORTING-ASSOCIATED PROTEIN 2.3) | chr1:1011388-1013212
           REVERSE
          Length = 210

 Score =  209 bits (532), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 120/148 (81%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKLV EIK+TAK+GNE ATKILARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS+
Sbjct: 39  EKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSV 98

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           + GM+GATKAM AM+K M P KQAKV++EFQKQSAQMDMT EMMS+SI            
Sbjct: 99  AAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDE 158

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQL 176
                NQVLDEIG+ IASQLSSAPKG++
Sbjct: 159 TEDLTNQVLDEIGIDIASQLSSAPKGKI 186


>AT2G06530.1 | Symbols: VPS2.1 | VPS2.1 | chr2:2588740-2590285
           REVERSE
          Length = 225

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 87/146 (59%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKL+ EIK+TAK G   A K++A+ L+R R QI      ++Q++GV+   Q L ++ ++
Sbjct: 41  EKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAM 100

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
              MKG TKAM  MN+QM      K+++EF++Q+ +M+M  E+M ++I            
Sbjct: 101 GEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEE 160

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKG 174
                +QVLDEIG+ I  +L +AP G
Sbjct: 161 TEDLVSQVLDEIGIDINQELVNAPSG 186