Jatropha Genome Database

JcCB0085061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085061.20 + phase: 1 /TE/pseudo/partial
         (252 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    80   1e-15

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
           +SSA+++YRA++ +  E++W+ Q   E+      P  L+CDN AA+HIA+N V HERTKH
Sbjct: 484 KSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKH 543

Query: 227 IKIDCHFIREK-IQQGVIS 244
           I+ DCH +RE+ + Q  +S
Sbjct: 544 IESDCHSVRERSVYQATLS 562