Jatropha Genome Database

JcCB0084921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.10 - phase: 1 /pseudo
         (389 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38530.1 | Symbols:  | tryptophan synthase-related | chr5:154...   582   e-166
AT4G27070.1 | Symbols: TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUB...    99   5e-21
AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPH...    95   6e-20
AT5G28237.1 | Symbols:  | tryptophan synthase, beta subunit, put...    86   3e-17

>AT5G38530.1 | Symbols:  | tryptophan synthase-related |
           chr5:15424097-15426294 FORWARD
          Length = 506

 Score =  582 bits (1500), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/355 (77%), Positives = 307/355 (86%), Gaps = 2/355 (0%)

Query: 11  KEKKMCLRLSNGFRARVKAI--SNANLKAIEIPEKWYNLIADXXXXXXXXXXXXTFEPVK 68
           ++     R+SNG   RVKA   S  N   +EIP++WYNL+AD            TFEP+K
Sbjct: 36  RKSNQATRVSNGSSLRVKAALRSTHNKSVVEIPKQWYNLVADLSVKPPPPLHPKTFEPIK 95

Query: 69  PEDLAPLFPDELIKQEATNEKFIDIPEQVLDIYKLWRPTPLIRAKRLEKLLDTPAKIYYK 128
           PEDLA LFP+ELIKQEAT E+FIDIPE+VL+IYKLWRPTPLIRAKRLEKLL TPA+IY+K
Sbjct: 96  PEDLAHLFPNELIKQEATQERFIDIPEEVLEIYKLWRPTPLIRAKRLEKLLQTPARIYFK 155

Query: 129 YEGVSPAGSHKPNTAVPQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVR 188
           YEG SPAGSHKPNTAVPQ +YNA++G+KN+VTETGAGQWG SLAFA SLFGL CEVWQV 
Sbjct: 156 YEGGSPAGSHKPNTAVPQAYYNAKEGVKNVVTETGAGQWGSSLAFASSLFGLDCEVWQVA 215

Query: 189 ASYDQKPYRRMMMETWGAKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNA 248
            SY  KPYRR+MM+TWGAKVHPSPS++T AGR IL+ DPS+PGSLGIAISEAVEVAA N 
Sbjct: 216 NSYHTKPYRRLMMQTWGAKVHPSPSDLTEAGRRILESDPSSPGSLGIAISEAVEVAARNE 275

Query: 249 DTKYCLGSVLNHVLLHQTIMGEECLKQMEAIGETPDMIIGCTGGGSNFAGLSFPFIREKL 308
           DTKYCLGSVLNHVLLHQTI+GEEC++QME  GETPD+IIGCTGGGSNFAGLSFPFIREKL
Sbjct: 276 DTKYCLGSVLNHVLLHQTIIGEECIQQMENFGETPDLIIGCTGGGSNFAGLSFPFIREKL 335

Query: 309 NGKINPVIRAVEPAACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAG 363
            GKINPVIRAVEP+ACPSLTKGVYAYD+GDTAG+TPLMKMHTLGHDFIPDPIHAG
Sbjct: 336 KGKINPVIRAVEPSACPSLTKGVYAYDFGDTAGLTPLMKMHTLGHDFIPDPIHAG 390


>AT4G27070.1 | Symbols: TSB2 | TSB2 (TRYPTOPHAN SYNTHASE
           BETA-SUBUNIT 2); tryptophan synthase |
           chr4:13586564-13588619 FORWARD
          Length = 475

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 129/302 (42%), Gaps = 45/302 (14%)

Query: 85  ATNEKFIDIPEQVLDIYKLWRPTPLIRAKRLEKLLDTPAK----IYYKYEGVSPAGSHKP 140
           AT+E F     ++L  Y + R +PL  A+RL +           IY K E ++  G+HK 
Sbjct: 113 ATDEDFQRELAEILKDY-VGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKI 171

Query: 141 NTAVPQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMM 200
           N AV Q     + G K ++ ETGAGQ G + A  C+ FGL C ++      +++      
Sbjct: 172 NNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFR 231

Query: 201 METWGAKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN 259
           M   GA+V        ++G   LK           A SEA+    TN + T Y LGSV  
Sbjct: 232 MRLLGAEVRG-----VHSGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAG 276

Query: 260 ------HVLLHQTIMGEECLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREKLNGKI 312
                  V     ++G+E  KQ ME  G  PD+++ C GGGSN  GL   F+ +     I
Sbjct: 277 PHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMI 336

Query: 313 NPVIRAVEPAA--------CPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGI 364
                 VE A           +LTKG    D G   G    +     G    P  I AG+
Sbjct: 337 G-----VEAAGFGLDSGKHAATLTKG----DVGVLHGAMSYLLQDDDGQIIEPHSISAGL 387

Query: 365 SY 366
            Y
Sbjct: 388 DY 389


>AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN
           SYNTHASE BETA-SUBUNIT 1); tryptophan synthase |
           chr5:22264805-22266738 REVERSE
          Length = 470

 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 126/302 (41%), Gaps = 45/302 (14%)

Query: 85  ATNEKFIDIPEQVLDIYKLWRPTPLIRAKRLEKLLDTPAK----IYYKYEGVSPAGSHKP 140
           AT++ F      +L  Y + R +PL  A+RL +           IY K E ++  G+HK 
Sbjct: 108 ATDDDFQRELAGILKDY-VGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKI 166

Query: 141 NTAVPQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMM 200
           N AV Q     + G K ++ ETGAGQ G + A  C+ FGL C ++      +++      
Sbjct: 167 NNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFR 226

Query: 201 METWGAKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN 259
           M   GA+V    S                  +L  A SEA+    TN + T Y LGSV  
Sbjct: 227 MRLLGAEVRGVHSGTA---------------TLKDATSEAIRDWVTNVETTHYILGSVAG 271

Query: 260 ------HVLLHQTIMGEECLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREKLNGKI 312
                  V     ++G+E  KQ +E  G  PD+++ C GGGSN  GL   F+ +     I
Sbjct: 272 PHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMI 331

Query: 313 NPVIRAVEPAA--------CPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGI 364
                 VE A           +LTKG    D G   G    +     G    P  I AG+
Sbjct: 332 G-----VEAAGFGLDSGKHAATLTKG----DVGVLHGAMSYLLQDDDGQIIEPHSISAGL 382

Query: 365 SY 366
            Y
Sbjct: 383 DY 384


>AT5G28237.1 | Symbols:  | tryptophan synthase, beta subunit,
           putative | chr5:10207477-10213542 REVERSE
          Length = 465

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 33/217 (15%)

Query: 103 LWRPTPLIRAKRLEK-------LLDTPAKIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGI 155
           + R TPL  A+RL +        ++   +IY K E +S  GSHK N A+ Q   + + G 
Sbjct: 116 VGRETPLYFAERLTEHYKNIVPTIEGGPEIYLKREDLSHCGSHKINNALAQAMISRRLGC 175

Query: 156 KNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNV 215
             +V  TGAGQ G + A AC+   L C V+   A  +++ +  + M+  GA+V       
Sbjct: 176 SRVVAATGAGQHGVATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLGAQV------- 228

Query: 216 TNAGRDILKKDPSTPGSLGIAISEAVEVAATNADTKYCL-GSVLN-H-----VLLHQTIM 268
                       S  G+   A SEA+     N  T Y L G+V+  H     V   Q+++
Sbjct: 229 -----------ISVEGTFKDASSEAIRNWVENLYTTYYLSGTVVGPHPCPIIVREFQSVI 277

Query: 269 GEECLKQMEAI-GETPDMIIGCTGGGSNFAGLSFPFI 304
           G+E  +Q + + G  PD+++ C G GSN  GL   F+
Sbjct: 278 GKETRRQAKQLWGGKPDVLVACVGSGSNALGLFHEFV 314