Jatropha Genome Database

JcCB0083891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083891.10 - phase: 0 
         (288 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06580.1 | Symbols: GAL1, GALK | GALK; ATP binding / galactok...   451   e-127
AT3G10700.1 | Symbols:  | GHMP kinase family protein | chr3:3346...    48   9e-06

>AT3G06580.1 | Symbols: GAL1, GALK | GALK; ATP binding /
           galactokinase | chr3:2049141-2051867 REVERSE
          Length = 496

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/288 (77%), Positives = 255/288 (88%)

Query: 1   MDQAISVMAQAGFAELIDFNPIRATDVKLPAGGTFVIAHSLAESQKAVTAATNYNNRVVE 60
           MDQAIS+MA+ GFAELIDFNP+RATDVKLP GG+FVIAHSLAESQKAVTAA NYNNRVVE
Sbjct: 209 MDQAISIMAKTGFAELIDFNPVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVE 268

Query: 61  CRLAAIVLGIKLGMKPQDAISKVKTLSDVEGLCVSFAGRHNSSDPVVAVKELLKEEPYTA 120
           CRLA+I+LG+KLGM+P++AISKVKTLSDVEGLCVSFAG   SSDP++AVKE LKEEPYTA
Sbjct: 269 CRLASIILGVKLGMEPKEAISKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTA 328

Query: 121 EEIEKITEQDLPXXXXXXXXXLDVLKAATHFKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 180
           EEIEKI E+ LP         L VL AATHFKLHQRAAHVYSEA+RVH FKDTV+SNLS+
Sbjct: 329 EEIEKILEEKLPSIVNNDPTSLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSD 388

Query: 181 EDKLKKLGDLMNESHYSCSVLYECSCPELEELVKICREHGALGARLTGAGWGGCAVALVK 240
           E+KLKKLGDLMNESHYSCSVLYECSCPELEELV++C+E+GALGARLTGAGWGGCAVALVK
Sbjct: 389 EEKLKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGALGARLTGAGWGGCAVALVK 448

Query: 241 EAIVPQFILNLKENFFQSRIDKGIIGKNDLGLYVFASKPSSGAAIFKF 288
           E  V QFI  +KE +++ R++KG++ K D+ LY+FASKPSSGAAIF  
Sbjct: 449 EFDVTQFIPAVKEKYYKKRVEKGVVKKEDMELYLFASKPSSGAAIFNL 496


>AT3G10700.1 | Symbols:  | GHMP kinase family protein |
           chr3:3346789-3350863 REVERSE
          Length = 424

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 153 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNESHYSCSVLYECSCPELEEL 212
           L +RA H +SE  RV   ++  +S       L++ G L++ S  S    YEC    L +L
Sbjct: 296 LAKRAEHYFSENMRVIKGREAWASG-----NLEEFGKLISASGLSSIENYECGAEPLIQL 350

Query: 213 VKIC-REHGALGARLTGAGWGGCAVALV 239
            KI  +  G  GAR +GAG+ GC +A V
Sbjct: 351 YKILLKAPGVYGARFSGAGFRGCCLAFV 378