Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (174 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67070.1 | Symbols: DIN9, PMI2 | DIN9 (DARK INDUCIBLE 9); man...   107   4e-24
AT3G02570.1 | Symbols: MEE31, PMI1 | MEE31 (MATERNAL EFFECT EMBR...   106   6e-24

>AT1G67070.1 | Symbols: DIN9, PMI2 | DIN9 (DARK INDUCIBLE 9);
           mannose-6-phosphate isomerase | chr1:25042324-25044412
           FORWARD
          Length = 441

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 75/145 (51%), Gaps = 53/145 (36%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQA------------------- 123
           AY+ G+C+ECMA SDNVVRAGLTPKHRD+QTLCSMLTYK                     
Sbjct: 297 AYISGDCVECMAASDNVVRAGLTPKHRDVQTLCSMLTYKLGYPEILKGFPLTPYVTRYLP 356

Query: 124 ---------------------------------GEGRMYTQLSKDVVTEGDVLFAPANTE 150
                                            G+G++ T  SK +V  GDVLF PA+ E
Sbjct: 357 PFDEFEVDHCDLPRGKSTVFPAVPGPSVYLVIEGKGQLRTGSSKVLVNRGDVLFVPADIE 416

Query: 151 VTITTTSELC-LYRAGVNSRFFQIL 174
           + +T  S++  LYRAGV+SRFFQ L
Sbjct: 417 IHVTGESDVMKLYRAGVSSRFFQTL 441


>AT3G02570.1 | Symbols: MEE31, PMI1 | MEE31 (MATERNAL EFFECT EMBRYO
           ARREST 31); mannose-6-phosphate isomerase |
           chr3:543463-545478 REVERSE
          Length = 432

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 73/141 (51%), Gaps = 52/141 (36%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQA------------------- 123
           AYL+GEC+E MATSDNVVRAGLT K  DIQTLCSML+YK                     
Sbjct: 289 AYLFGECLEVMATSDNVVRAGLTSKPLDIQTLCSMLSYKLGYPEILKGTRIRPYITRYLP 348

Query: 124 ---------------------------------GEGRMYTQLSKDVVTEGDVLFAPANTE 150
                                            GEGRM T+ S D ++ GDVLF PA+TE
Sbjct: 349 PFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQGEGRMSTEASADGISMGDVLFVPADTE 408

Query: 151 VTITTTSELCLYRAGVNSRFF 171
           + + ++S+L LYRAG+NSRF 
Sbjct: 409 IHLRSSSDLKLYRAGINSRFL 429