Jatropha Genome Database

JcCB0083701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.10 + phase: 2 /partial
         (181 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02560.2 | Symbols:  | 40S ribosomal protein S7 (RPS7B) | chr...   292   9e-80
AT3G02560.1 | Symbols:  | 40S ribosomal protein S7 (RPS7B) | chr...   292   9e-80
AT5G16130.1 | Symbols:  | 40S ribosomal protein S7 (RPS7C) | chr...   286   3e-78
AT1G48830.2 | Symbols:  | 40S ribosomal protein S7 (RPS7A) | chr...   284   2e-77
AT1G48830.1 | Symbols:  | 40S ribosomal protein S7 (RPS7A) | chr...   284   2e-77

>AT3G02560.2 | Symbols:  | 40S ribosomal protein S7 (RPS7B) |
           chr3:542341-543168 FORWARD
          Length = 191

 Score =  292 bits (747), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 155/164 (94%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL+INQAVQMD+SGNRKAVVIYVP+RLRKA+RKIHLRLVRELEKK
Sbjct: 28  FDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLTSVH+AMLEDV YPAEIVGKR RYR+DG
Sbjct: 88  FSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           +KI+K+FLD K +N+TEYKLET  GVYRKLTGKDVVFEYP+ EA
Sbjct: 148 TKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191


>AT3G02560.1 | Symbols:  | 40S ribosomal protein S7 (RPS7B) |
           chr3:542341-543168 FORWARD
          Length = 191

 Score =  292 bits (747), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 155/164 (94%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL+INQAVQMD+SGNRKAVVIYVP+RLRKA+RKIHLRLVRELEKK
Sbjct: 28  FDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLTSVH+AMLEDV YPAEIVGKR RYR+DG
Sbjct: 88  FSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           +KI+K+FLD K +N+TEYKLET  GVYRKLTGKDVVFEYP+ EA
Sbjct: 148 TKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191


>AT5G16130.1 | Symbols:  | 40S ribosomal protein S7 (RPS7C) |
           chr5:5268984-5269912 FORWARD
          Length = 190

 Score =  286 bits (733), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 151/161 (93%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL+INQAV MD+SGNRKAVVIYVP+RLRKA+RKIH RLVRELEKK
Sbjct: 28  FDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+ + TRRI+RPPKKG+AVQRPR+RTLTSVH+AMLEDV +PAEIVGKR RYR+DG
Sbjct: 88  FSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPI 178
           SKI+K+FLD KE+NNTEYKLET  GVYRKLTGKDVVFEYP+
Sbjct: 148 SKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188


>AT1G48830.2 | Symbols:  | 40S ribosomal protein S7 (RPS7A) |
           chr1:18059854-18060935 REVERSE
          Length = 191

 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/164 (81%), Positives = 155/164 (94%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL++N AVQ+D+SG RKA+V+ VPYRLRKAYRKIH+RLVRELEKK
Sbjct: 28  FDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+LIATRRIVRPPKKGSA +RPR+RTLTSVH+A+L+DVV PAEIVGKR RYR+DG
Sbjct: 88  FSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           +KI+K+FLDPKERNNTEYK+E F+ VY+KLTGKDVVFE+PITEA
Sbjct: 148 TKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191


>AT1G48830.1 | Symbols:  | 40S ribosomal protein S7 (RPS7A) |
           chr1:18059854-18060935 REVERSE
          Length = 191

 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/164 (81%), Positives = 155/164 (94%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL++N AVQ+D+SG RKA+V+ VPYRLRKAYRKIH+RLVRELEKK
Sbjct: 28  FDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+LIATRRIVRPPKKGSA +RPR+RTLTSVH+A+L+DVV PAEIVGKR RYR+DG
Sbjct: 88  FSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           +KI+K+FLDPKERNNTEYK+E F+ VY+KLTGKDVVFE+PITEA
Sbjct: 148 TKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191