Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083591.10 + phase: 0 
         (160 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...   258   8e-70

>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
           chr1:23422068-23423771 REVERSE
          Length = 333

 Score =  258 bits (660), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 126/144 (87%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQENVFKVCDQPHPLHVKN+VR 
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRN 248

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 135
           V+E KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 249 VLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308

Query: 136 GVGSYXXXXXXXXXXXXVRETAKA 159
           GVGSY            VRETAKA
Sbjct: 309 GVGSYLQLCGLLAKLSIVRETAKA 332