Jatropha Genome Database

JcCB0082981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082981.10 - phase: 0 /pseudo/partial
         (974 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26330.1 | Symbols:  | DNA binding | chr1:9107625-9113520 FOR...   204   2e-52

>AT1G26330.1 | Symbols:  | DNA binding | chr1:9107625-9113520
           FORWARD
          Length = 1189

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 134/219 (61%)

Query: 755 PGSEKQGTLFCHNKTLISKEVQGSSELKKQRNLELNNELEDAVEFLGCYFHPMPVLLLLL 814
           P +E Q       K    +E   SS LK  R++++NNE+E  VE LGCYFHPMPV  +LL
Sbjct: 742 PSTESQYKENTSEKCTSVQEFPASSNLKLNRDVKINNEMEKTVELLGCYFHPMPVSSVLL 801

Query: 815 SRKGNEIYICAVCGLPVDKNRTLFLYKLAVEEPKIGCPYFVGHTSVAWPSSTDIFGREIA 874
              GNEIYI  +     D+ RTLF+YK++ E P  G P  +GHT    P   D       
Sbjct: 802 RTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSIIGHTPAILPIVDDKSSGNGT 861

Query: 875 FERSGLQLTPDGKCLVLLGNTRTPYCREGRIDCLCSTCTTDCNENSTVKIVQVQDGYVSV 934
            E S L  TPDG  L+L GN +TPYCR+   DC C  CT+ C E + V+IVQV+ G+VS+
Sbjct: 862 LEISNLHFTPDGLHLILTGNIKTPYCRKRETDCSCLICTSACFEENAVRIVQVKTGHVSL 921

Query: 935 LLKLRTTDSLQCILVCEPDHIIAAGESRGLNLWTMNSTW 973
           + KL+  DS+QC++VC+P+++IAA +S  L +W MNS W
Sbjct: 922 VTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHW 960



 Score =  199 bits (507), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 218/421 (51%), Gaps = 58/421 (13%)

Query: 1   KKEMYLQRGKDRYPYPVGYQARRAYNGGTYKMEIQEGHKGPLFVITSADGHLCSGQTADI 60
           KK     RGKDR+PYPVGY+A RA++G TY MEI+EG KGPLF+I   D    +GQT DI
Sbjct: 31  KKYWSSSRGKDRFPYPVGYKAVRAHSGNTYYMEIEEGAKGPLFLIRYLDESW-TGQTPDI 89

Query: 61  AWDKFQKKGCPRMKIWHGKRFLCKIDGIEFFGFRNPFVQRLLRELVANVNGVAEHSLLPS 120
           AW K QK     +KIWHGKRF CK+ G+EFFGF+NP VQRLLRELV N +G+ E S  PS
Sbjct: 90  AWGKLQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGMVESS--PS 147

Query: 121 GTCNGASNMEHNNQCQDSHTCSDLLPYLSRPQVTGKRSKRFKIIDPKSLGIDGLKRLRAG 180
                AS++  N++        +LL YL  P    KRS++  I    S+     K+ R  
Sbjct: 148 SR---ASHIRVNDERPVMCANPNLLCYLDMPVARKKRSRKPGITYQNSVAKSVHKKPRF- 203

Query: 181 NLKCIVEPSNSINGNPKQGSSSSPSTCSFHLKDDSCRLLGASSTGVQSDYATGGENSHLA 240
                    +S+ G  +  +S+  S CS   + ++     A      S++AT  E S L 
Sbjct: 204 --------QDSLTGG-EILNSAPVSICSGKGEVETVGQQVALPEQFHSNHAT-NEYSSLP 253

Query: 241 KDGLSSKSVDYSDHLGEKTVPVYEESKLASSEDNKSTVVQKFSAE--------------- 285
            +      +          +P+ E ++L  S   KS  + KFS E               
Sbjct: 254 SEKPPQMKI---------FIPIQETNRLPDS--CKSKPLSKFSEEFHGLQEKENKPNDDN 302

Query: 286 ---ENPHQWRSKL----*VHYVQKNLQASMILIYGLLTH*TLCKEEIMATEVADSEELAN 338
              E+P+   S       + ++Q N  +S   I    +   + KEE+    +   E +  
Sbjct: 303 FLHESPNMTASSFCAPDTLDFLQDNTASSAPKINDDTS--CMKKEELTHANMVVGEGILA 360

Query: 339 KPYPKEEMGTSSSHLSSERSDFDSVGQDIAKSMMTVLLPQAIPLLKKTSSKKKRIVSPPE 398
           +P   E++  S+ +L+S++SD D V Q+ AK+MM++LLPQAIPLLKKTSSKK     PP 
Sbjct: 361 EPN-AEDLADSTLNLTSKKSDSDLVDQETAKTMMSLLLPQAIPLLKKTSSKK-----PPR 414

Query: 399 N 399
           N
Sbjct: 415 N 415